Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 130890 | 0.66 | 0.98182 |
Target: 5'- gGCGUga-GGUCcucaugagguguguGGAGcuCGCCGCCAGg -3' miRNA: 3'- -CGCAagcCCAG--------------CCUCuuGUGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 228064 | 0.66 | 0.979986 |
Target: 5'- aGCG-UCGGGccucccucaucaCGGGGGGCACCuACCu- -3' miRNA: 3'- -CGCaAGCCCa-----------GCCUCUUGUGG-UGGuc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 89782 | 0.66 | 0.984243 |
Target: 5'- uGCGUUUGGGacuaUCGGAuacGACAUCGgCGGc -3' miRNA: 3'- -CGCAAGCCC----AGCCUc--UUGUGGUgGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 90660 | 0.66 | 0.982402 |
Target: 5'- cGCGUcgUCGGuGgUGGAGAGCGCCGa--- -3' miRNA: 3'- -CGCA--AGCC-CaGCCUCUUGUGGUgguc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 76139 | 0.66 | 0.982402 |
Target: 5'- cGCcagCGGGUCcccacGAACACCACCGu -3' miRNA: 3'- -CGcaaGCCCAGccu--CUUGUGGUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 65351 | 0.66 | 0.980405 |
Target: 5'- uGCGggUGGGUCGGucGGAucgaccugggcgACGCgCGCCGc -3' miRNA: 3'- -CGCaaGCCCAGCC--UCU------------UGUG-GUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 3364 | 0.66 | 0.980405 |
Target: 5'- uCGuUUCGGGgCGGuAGAACAgUugCAGa -3' miRNA: 3'- cGC-AAGCCCaGCC-UCUUGUgGugGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 128571 | 0.66 | 0.978018 |
Target: 5'- ----aCGGGUCaugacgaGGAGAACGgguCCGCCGGc -3' miRNA: 3'- cgcaaGCCCAG-------CCUCUUGU---GGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 162481 | 0.66 | 0.980405 |
Target: 5'- cGCGgcCGGccaGGAcgagGAGCGCCACUAGg -3' miRNA: 3'- -CGCaaGCCcagCCU----CUUGUGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 210707 | 0.66 | 0.984243 |
Target: 5'- uGCGUccucCGGGUaGGAuGACGCCcgucGCCGGa -3' miRNA: 3'- -CGCAa---GCCCAgCCUcUUGUGG----UGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 115138 | 0.66 | 0.97591 |
Target: 5'- ----cCGGGUagGGAGAGguCACCGCCAu -3' miRNA: 3'- cgcaaGCCCAg-CCUCUU--GUGGUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 97986 | 0.66 | 0.97591 |
Target: 5'- cGUGUaCGGGUUGGA--GCACUACUu- -3' miRNA: 3'- -CGCAaGCCCAGCCUcuUGUGGUGGuc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 198243 | 0.66 | 0.97591 |
Target: 5'- ---aUCGGGggcgaGGAGGACACCAUa-- -3' miRNA: 3'- cgcaAGCCCag---CCUCUUGUGGUGguc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 170430 | 0.66 | 0.984243 |
Target: 5'- uGCGg-CGGaUCGacgaAGGACGCCGCCGGa -3' miRNA: 3'- -CGCaaGCCcAGCc---UCUUGUGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 107547 | 0.66 | 0.984065 |
Target: 5'- aGCug-CGGGUCGuGcgcuaccGGGACGCCACCc- -3' miRNA: 3'- -CGcaaGCCCAGC-C-------UCUUGUGGUGGuc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 24951 | 0.66 | 0.973399 |
Target: 5'- aCGaUCGcGUUGGAuGACACUACCAGu -3' miRNA: 3'- cGCaAGCcCAGCCUcUUGUGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 32517 | 0.67 | 0.957604 |
Target: 5'- cGCGgcCGGGucccUCGGAGAccuagccACACCcCCAc -3' miRNA: 3'- -CGCaaGCCC----AGCCUCU-------UGUGGuGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 120422 | 0.67 | 0.961453 |
Target: 5'- cGCGgccCGGGggucgagcgCGGccuGAuACGCCGCCAGg -3' miRNA: 3'- -CGCaa-GCCCa--------GCCu--CU-UGUGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 67655 | 0.67 | 0.961453 |
Target: 5'- cGCG-UCGGugauGUCGGGGAGCGgCGgCGGc -3' miRNA: 3'- -CGCaAGCC----CAGCCUCUUGUgGUgGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 124521 | 0.67 | 0.957964 |
Target: 5'- cGCGUucUCGGGcaCGu---GCGCCACCAGg -3' miRNA: 3'- -CGCA--AGCCCa-GCcucuUGUGGUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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