Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 142471 | 0.67 | 0.964736 |
Target: 5'- uGUGUaUGGGgCGGuGGACGCgaGCCAGg -3' miRNA: 3'- -CGCAaGCCCaGCCuCUUGUGg-UGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 146823 | 0.67 | 0.970703 |
Target: 5'- cGCGcaCGGGggacucGAGAGCggGCCGCCGGg -3' miRNA: 3'- -CGCaaGCCCagc---CUCUUG--UGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 42692 | 0.67 | 0.970703 |
Target: 5'- cGCGUUCGgagcugcagaGGUCGGcGAGCGCUccuCCGc -3' miRNA: 3'- -CGCAAGC----------CCAGCCuCUUGUGGu--GGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 61161 | 0.67 | 0.964736 |
Target: 5'- gGCGUcgaagaUCGGGUUGGA----ACCGCCGa -3' miRNA: 3'- -CGCA------AGCCCAGCCUcuugUGGUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 147241 | 0.67 | 0.961453 |
Target: 5'- cCGgaUGGGUCGG----CGCCACCGGa -3' miRNA: 3'- cGCaaGCCCAGCCucuuGUGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 67655 | 0.67 | 0.961453 |
Target: 5'- cGCG-UCGGugauGUCGGGGAGCGgCGgCGGc -3' miRNA: 3'- -CGCaAGCC----CAGCCUCUUGUgGUgGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 124521 | 0.67 | 0.957964 |
Target: 5'- cGCGUucUCGGGcaCGu---GCGCCACCAGg -3' miRNA: 3'- -CGCA--AGCCCa-GCcucuUGUGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 7444 | 0.68 | 0.941871 |
Target: 5'- cGUGgcagCGGGcgaGGAGAccuuggGCACCACCGa -3' miRNA: 3'- -CGCaa--GCCCag-CCUCU------UGUGGUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 148799 | 0.68 | 0.932504 |
Target: 5'- aGUGUUCGGGUCGGG--ACAUgAUCu- -3' miRNA: 3'- -CGCAAGCCCAGCCUcuUGUGgUGGuc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 26877 | 0.68 | 0.946221 |
Target: 5'- -gGUccUCGGGUCGcGAGGGCGgCAUgAGa -3' miRNA: 3'- cgCA--AGCCCAGC-CUCUUGUgGUGgUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 129976 | 0.68 | 0.937299 |
Target: 5'- aGCGa--GGGUcaggcucugCGGAGGAUACCGCCc- -3' miRNA: 3'- -CGCaagCCCA---------GCCUCUUGUGGUGGuc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 500 | 0.68 | 0.937299 |
Target: 5'- cGCGUccgCGGGaaggCGGGGugaGGCGCCccGCCAGc -3' miRNA: 3'- -CGCAa--GCCCa---GCCUC---UUGUGG--UGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 116761 | 0.69 | 0.922239 |
Target: 5'- gGCGUacaUCGGGUCcGAGAucgccuucgguuGCGCgGCCAc -3' miRNA: 3'- -CGCA---AGCCCAGcCUCU------------UGUGgUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 190314 | 0.69 | 0.905162 |
Target: 5'- gGCGUUCGGaGauaCGGuGAGgACCACCu- -3' miRNA: 3'- -CGCAAGCC-Ca--GCCuCUUgUGGUGGuc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 101415 | 0.7 | 0.879326 |
Target: 5'- aGgGUgcuggUGaGGUCGGAGAAgagguCGCCGCCGGc -3' miRNA: 3'- -CgCAa----GC-CCAGCCUCUU-----GUGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 108328 | 0.7 | 0.879326 |
Target: 5'- aGCGUgCGGGgcgaCGG-GGGCAUCugCAGa -3' miRNA: 3'- -CGCAaGCCCa---GCCuCUUGUGGugGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 14357 | 0.7 | 0.865152 |
Target: 5'- aGUaUUCGGGaUCGG-GcGCACCACCAa -3' miRNA: 3'- -CGcAAGCCC-AGCCuCuUGUGGUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 153611 | 0.7 | 0.892673 |
Target: 5'- ---aUCGGGUCGGcucGGGcgGCGCCACuCGGa -3' miRNA: 3'- cgcaAGCCCAGCC---UCU--UGUGGUG-GUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 202934 | 0.7 | 0.879326 |
Target: 5'- gGCGUUCGGGguccUGGGGAgaggACGCgACaCAGu -3' miRNA: 3'- -CGCAAGCCCa---GCCUCU----UGUGgUG-GUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 203834 | 0.7 | 0.872341 |
Target: 5'- gGCGUUCGaGGUCGaaaGGGACG-CGCCGGc -3' miRNA: 3'- -CGCAAGC-CCAGCc--UCUUGUgGUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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