Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 95294 | 0.67 | 0.961453 |
Target: 5'- cGCGcgUCGGGUCuGGAGAugAUCuugaaGCaCAGc -3' miRNA: 3'- -CGCa-AGCCCAG-CCUCUugUGG-----UG-GUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 120422 | 0.67 | 0.961453 |
Target: 5'- cGCGgccCGGGggucgagcgCGGccuGAuACGCCGCCAGg -3' miRNA: 3'- -CGCaa-GCCCa--------GCCu--CU-UGUGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 99496 | 0.67 | 0.961453 |
Target: 5'- gGCGcaugCGcGGUCGGuGAugugcaACACCACCu- -3' miRNA: 3'- -CGCaa--GC-CCAGCCuCU------UGUGGUGGuc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 147241 | 0.67 | 0.961453 |
Target: 5'- cCGgaUGGGUCGG----CGCCACCGGa -3' miRNA: 3'- cGCaaGCCCAGCCucuuGUGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 67655 | 0.67 | 0.961453 |
Target: 5'- cGCG-UCGGugauGUCGGGGAGCGgCGgCGGc -3' miRNA: 3'- -CGCaAGCC----CAGCCUCUUGUgGUgGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 124521 | 0.67 | 0.957964 |
Target: 5'- cGCGUucUCGGGcaCGu---GCGCCACCAGg -3' miRNA: 3'- -CGCA--AGCCCa-GCcucuUGUGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 32517 | 0.67 | 0.957604 |
Target: 5'- cGCGgcCGGGucccUCGGAGAccuagccACACCcCCAc -3' miRNA: 3'- -CGCaaGCCC----AGCCUCU-------UGUGGuGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 26877 | 0.68 | 0.946221 |
Target: 5'- -gGUccUCGGGUCGcGAGGGCGgCAUgAGa -3' miRNA: 3'- cgCA--AGCCCAGC-CUCUUGUgGUGgUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 7444 | 0.68 | 0.941871 |
Target: 5'- cGUGgcagCGGGcgaGGAGAccuuggGCACCACCGa -3' miRNA: 3'- -CGCaa--GCCCag-CCUCU------UGUGGUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 129976 | 0.68 | 0.937299 |
Target: 5'- aGCGa--GGGUcaggcucugCGGAGGAUACCGCCc- -3' miRNA: 3'- -CGCaagCCCA---------GCCUCUUGUGGUGGuc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 500 | 0.68 | 0.937299 |
Target: 5'- cGCGUccgCGGGaaggCGGGGugaGGCGCCccGCCAGc -3' miRNA: 3'- -CGCAa--GCCCa---GCCUC---UUGUGG--UGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 148799 | 0.68 | 0.932504 |
Target: 5'- aGUGUUCGGGUCGGG--ACAUgAUCu- -3' miRNA: 3'- -CGCAAGCCCAGCCUcuUGUGgUGGuc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 116761 | 0.69 | 0.922239 |
Target: 5'- gGCGUacaUCGGGUCcGAGAucgccuucgguuGCGCgGCCAc -3' miRNA: 3'- -CGCA---AGCCCAGcCUCU------------UGUGgUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 190314 | 0.69 | 0.905162 |
Target: 5'- gGCGUUCGGaGauaCGGuGAGgACCACCu- -3' miRNA: 3'- -CGCAAGCC-Ca--GCCuCUUgUGGUGGuc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 153611 | 0.7 | 0.892673 |
Target: 5'- ---aUCGGGUCGGcucGGGcgGCGCCACuCGGa -3' miRNA: 3'- cgcaAGCCCAGCC---UCU--UGUGGUG-GUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 202934 | 0.7 | 0.879326 |
Target: 5'- gGCGUUCGGGguccUGGGGAgaggACGCgACaCAGu -3' miRNA: 3'- -CGCAAGCCCa---GCCUCU----UGUGgUG-GUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 108328 | 0.7 | 0.879326 |
Target: 5'- aGCGUgCGGGgcgaCGG-GGGCAUCugCAGa -3' miRNA: 3'- -CGCAaGCCCa---GCCuCUUGUGGugGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 101415 | 0.7 | 0.879326 |
Target: 5'- aGgGUgcuggUGaGGUCGGAGAAgagguCGCCGCCGGc -3' miRNA: 3'- -CgCAa----GC-CCAGCCUCUU-----GUGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 203834 | 0.7 | 0.872341 |
Target: 5'- gGCGUUCGaGGUCGaaaGGGACG-CGCCGGc -3' miRNA: 3'- -CGCAAGC-CCAGCc--UCUUGUgGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 14357 | 0.7 | 0.865152 |
Target: 5'- aGUaUUCGGGaUCGG-GcGCACCACCAa -3' miRNA: 3'- -CGcAAGCCC-AGCCuCuUGUGGUGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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