Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 199198 | 0.71 | 0.857767 |
Target: 5'- uCGUcgaGGGUCGcGAGGACGCgCACCGc -3' miRNA: 3'- cGCAag-CCCAGC-CUCUUGUG-GUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 64883 | 0.71 | 0.85019 |
Target: 5'- cGCGgcgCGcGUCGGAGAagaGCGgCGCCAGu -3' miRNA: 3'- -CGCaa-GCcCAGCCUCU---UGUgGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 120338 | 0.71 | 0.842427 |
Target: 5'- cGCGaucUCGGcggcgaugucGUCGGAGAGCGCCcggaggacccuGCCGGa -3' miRNA: 3'- -CGCa--AGCC----------CAGCCUCUUGUGG-----------UGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 198743 | 0.73 | 0.74677 |
Target: 5'- cGCGUgucguaCGGGUCGGAGGucCGuCCGCaCAGa -3' miRNA: 3'- -CGCAa-----GCCCAGCCUCUu-GU-GGUG-GUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 148085 | 0.73 | 0.72783 |
Target: 5'- uGCGUcuguuUCGGcGUCGGAGAgaugguGCACCACg-- -3' miRNA: 3'- -CGCA-----AGCC-CAGCCUCU------UGUGGUGguc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 164781 | 0.73 | 0.72783 |
Target: 5'- -aGgaCGGGUUGGAGAuugucgagacggGCGCCACCGc -3' miRNA: 3'- cgCaaGCCCAGCCUCU------------UGUGGUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 80843 | 0.74 | 0.71824 |
Target: 5'- aGCGagCGGaUCGGAcGAGCGCCagGCCAGg -3' miRNA: 3'- -CGCaaGCCcAGCCU-CUUGUGG--UGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 68263 | 0.74 | 0.689085 |
Target: 5'- cGUGacCGGGUCGGccgaaGGAACcCCACCGGc -3' miRNA: 3'- -CGCaaGCCCAGCC-----UCUUGuGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 71940 | 0.75 | 0.649627 |
Target: 5'- gGUGgcCuGGUCGGAGGcgACGCCGCCGGu -3' miRNA: 3'- -CGCaaGcCCAGCCUCU--UGUGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 157150 | 0.76 | 0.57053 |
Target: 5'- cGCGUagUUGGuGUUGGAGucguACACCACCAa -3' miRNA: 3'- -CGCA--AGCC-CAGCCUCu---UGUGGUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 41496 | 0.77 | 0.560761 |
Target: 5'- gGCG-UCGGGaCGGGGAGCGcgcgggcggucCCGCCAGa -3' miRNA: 3'- -CGCaAGCCCaGCCUCUUGU-----------GGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 185475 | 0.77 | 0.551038 |
Target: 5'- gGUGgugCGGGUCgGGAGGcaGCGCCGCCAc -3' miRNA: 3'- -CGCaa-GCCCAG-CCUCU--UGUGGUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 176706 | 0.77 | 0.541367 |
Target: 5'- cGCGUagCGGGUUGGAGAACGUCAUCGu -3' miRNA: 3'- -CGCAa-GCCCAGCCUCUUGUGGUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 198467 | 1.1 | 0.005584 |
Target: 5'- cGCGUUCGGGUCGGAGAACACCACCAGc -3' miRNA: 3'- -CGCAAGCCCAGCCUCUUGUGGUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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