miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 3' -54.8 NC_004065.1 + 500 0.68 0.937299
Target:  5'- cGCGUccgCGGGaaggCGGGGugaGGCGCCccGCCAGc -3'
miRNA:   3'- -CGCAa--GCCCa---GCCUC---UUGUGG--UGGUC- -5'
16206 3' -54.8 NC_004065.1 + 3364 0.66 0.980405
Target:  5'- uCGuUUCGGGgCGGuAGAACAgUugCAGa -3'
miRNA:   3'- cGC-AAGCCCaGCC-UCUUGUgGugGUC- -5'
16206 3' -54.8 NC_004065.1 + 7444 0.68 0.941871
Target:  5'- cGUGgcagCGGGcgaGGAGAccuuggGCACCACCGa -3'
miRNA:   3'- -CGCaa--GCCCag-CCUCU------UGUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 14357 0.7 0.865152
Target:  5'- aGUaUUCGGGaUCGG-GcGCACCACCAa -3'
miRNA:   3'- -CGcAAGCCC-AGCCuCuUGUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 24951 0.66 0.973399
Target:  5'- aCGaUCGcGUUGGAuGACACUACCAGu -3'
miRNA:   3'- cGCaAGCcCAGCCUcUUGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 26877 0.68 0.946221
Target:  5'- -gGUccUCGGGUCGcGAGGGCGgCAUgAGa -3'
miRNA:   3'- cgCA--AGCCCAGC-CUCUUGUgGUGgUC- -5'
16206 3' -54.8 NC_004065.1 + 32517 0.67 0.957604
Target:  5'- cGCGgcCGGGucccUCGGAGAccuagccACACCcCCAc -3'
miRNA:   3'- -CGCaaGCCC----AGCCUCU-------UGUGGuGGUc -5'
16206 3' -54.8 NC_004065.1 + 41496 0.77 0.560761
Target:  5'- gGCG-UCGGGaCGGGGAGCGcgcgggcggucCCGCCAGa -3'
miRNA:   3'- -CGCaAGCCCaGCCUCUUGU-----------GGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 42692 0.67 0.970703
Target:  5'- cGCGUUCGgagcugcagaGGUCGGcGAGCGCUccuCCGc -3'
miRNA:   3'- -CGCAAGC----------CCAGCCuCUUGUGGu--GGUc -5'
16206 3' -54.8 NC_004065.1 + 61161 0.67 0.964736
Target:  5'- gGCGUcgaagaUCGGGUUGGA----ACCGCCGa -3'
miRNA:   3'- -CGCA------AGCCCAGCCUcuugUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 64883 0.71 0.85019
Target:  5'- cGCGgcgCGcGUCGGAGAagaGCGgCGCCAGu -3'
miRNA:   3'- -CGCaa-GCcCAGCCUCU---UGUgGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 65351 0.66 0.980405
Target:  5'- uGCGggUGGGUCGGucGGAucgaccugggcgACGCgCGCCGc -3'
miRNA:   3'- -CGCaaGCCCAGCC--UCU------------UGUG-GUGGUc -5'
16206 3' -54.8 NC_004065.1 + 67655 0.67 0.961453
Target:  5'- cGCG-UCGGugauGUCGGGGAGCGgCGgCGGc -3'
miRNA:   3'- -CGCaAGCC----CAGCCUCUUGUgGUgGUC- -5'
16206 3' -54.8 NC_004065.1 + 68263 0.74 0.689085
Target:  5'- cGUGacCGGGUCGGccgaaGGAACcCCACCGGc -3'
miRNA:   3'- -CGCaaGCCCAGCC-----UCUUGuGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 71940 0.75 0.649627
Target:  5'- gGUGgcCuGGUCGGAGGcgACGCCGCCGGu -3'
miRNA:   3'- -CGCaaGcCCAGCCUCU--UGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 76139 0.66 0.982402
Target:  5'- cGCcagCGGGUCcccacGAACACCACCGu -3'
miRNA:   3'- -CGcaaGCCCAGccu--CUUGUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 80843 0.74 0.71824
Target:  5'- aGCGagCGGaUCGGAcGAGCGCCagGCCAGg -3'
miRNA:   3'- -CGCaaGCCcAGCCU-CUUGUGG--UGGUC- -5'
16206 3' -54.8 NC_004065.1 + 89782 0.66 0.984243
Target:  5'- uGCGUUUGGGacuaUCGGAuacGACAUCGgCGGc -3'
miRNA:   3'- -CGCAAGCCC----AGCCUc--UUGUGGUgGUC- -5'
16206 3' -54.8 NC_004065.1 + 90660 0.66 0.982402
Target:  5'- cGCGUcgUCGGuGgUGGAGAGCGCCGa--- -3'
miRNA:   3'- -CGCA--AGCC-CaGCCUCUUGUGGUgguc -5'
16206 3' -54.8 NC_004065.1 + 95294 0.67 0.961453
Target:  5'- cGCGcgUCGGGUCuGGAGAugAUCuugaaGCaCAGc -3'
miRNA:   3'- -CGCa-AGCCCAG-CCUCUugUGG-----UG-GUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.