miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 3' -54.8 NC_004065.1 + 97986 0.66 0.97591
Target:  5'- cGUGUaCGGGUUGGA--GCACUACUu- -3'
miRNA:   3'- -CGCAaGCCCAGCCUcuUGUGGUGGuc -5'
16206 3' -54.8 NC_004065.1 + 99496 0.67 0.961453
Target:  5'- gGCGcaugCGcGGUCGGuGAugugcaACACCACCu- -3'
miRNA:   3'- -CGCaa--GC-CCAGCCuCU------UGUGGUGGuc -5'
16206 3' -54.8 NC_004065.1 + 101415 0.7 0.879326
Target:  5'- aGgGUgcuggUGaGGUCGGAGAAgagguCGCCGCCGGc -3'
miRNA:   3'- -CgCAa----GC-CCAGCCUCUU-----GUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 107547 0.66 0.984065
Target:  5'- aGCug-CGGGUCGuGcgcuaccGGGACGCCACCc- -3'
miRNA:   3'- -CGcaaGCCCAGC-C-------UCUUGUGGUGGuc -5'
16206 3' -54.8 NC_004065.1 + 108328 0.7 0.879326
Target:  5'- aGCGUgCGGGgcgaCGG-GGGCAUCugCAGa -3'
miRNA:   3'- -CGCAaGCCCa---GCCuCUUGUGGugGUC- -5'
16206 3' -54.8 NC_004065.1 + 115138 0.66 0.97591
Target:  5'- ----cCGGGUagGGAGAGguCACCGCCAu -3'
miRNA:   3'- cgcaaGCCCAg-CCUCUU--GUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 116761 0.69 0.922239
Target:  5'- gGCGUacaUCGGGUCcGAGAucgccuucgguuGCGCgGCCAc -3'
miRNA:   3'- -CGCA---AGCCCAGcCUCU------------UGUGgUGGUc -5'
16206 3' -54.8 NC_004065.1 + 120338 0.71 0.842427
Target:  5'- cGCGaucUCGGcggcgaugucGUCGGAGAGCGCCcggaggacccuGCCGGa -3'
miRNA:   3'- -CGCa--AGCC----------CAGCCUCUUGUGG-----------UGGUC- -5'
16206 3' -54.8 NC_004065.1 + 120422 0.67 0.961453
Target:  5'- cGCGgccCGGGggucgagcgCGGccuGAuACGCCGCCAGg -3'
miRNA:   3'- -CGCaa-GCCCa--------GCCu--CU-UGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 124521 0.67 0.957964
Target:  5'- cGCGUucUCGGGcaCGu---GCGCCACCAGg -3'
miRNA:   3'- -CGCA--AGCCCa-GCcucuUGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 128571 0.66 0.978018
Target:  5'- ----aCGGGUCaugacgaGGAGAACGgguCCGCCGGc -3'
miRNA:   3'- cgcaaGCCCAG-------CCUCUUGU---GGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 129976 0.68 0.937299
Target:  5'- aGCGa--GGGUcaggcucugCGGAGGAUACCGCCc- -3'
miRNA:   3'- -CGCaagCCCA---------GCCUCUUGUGGUGGuc -5'
16206 3' -54.8 NC_004065.1 + 130890 0.66 0.98182
Target:  5'- gGCGUga-GGUCcucaugagguguguGGAGcuCGCCGCCAGg -3'
miRNA:   3'- -CGCAagcCCAG--------------CCUCuuGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 142471 0.67 0.964736
Target:  5'- uGUGUaUGGGgCGGuGGACGCgaGCCAGg -3'
miRNA:   3'- -CGCAaGCCCaGCCuCUUGUGg-UGGUC- -5'
16206 3' -54.8 NC_004065.1 + 146823 0.67 0.970703
Target:  5'- cGCGcaCGGGggacucGAGAGCggGCCGCCGGg -3'
miRNA:   3'- -CGCaaGCCCagc---CUCUUG--UGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 147241 0.67 0.961453
Target:  5'- cCGgaUGGGUCGG----CGCCACCGGa -3'
miRNA:   3'- cGCaaGCCCAGCCucuuGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 148085 0.73 0.72783
Target:  5'- uGCGUcuguuUCGGcGUCGGAGAgaugguGCACCACg-- -3'
miRNA:   3'- -CGCA-----AGCC-CAGCCUCU------UGUGGUGguc -5'
16206 3' -54.8 NC_004065.1 + 148799 0.68 0.932504
Target:  5'- aGUGUUCGGGUCGGG--ACAUgAUCu- -3'
miRNA:   3'- -CGCAAGCCCAGCCUcuUGUGgUGGuc -5'
16206 3' -54.8 NC_004065.1 + 153611 0.7 0.892673
Target:  5'- ---aUCGGGUCGGcucGGGcgGCGCCACuCGGa -3'
miRNA:   3'- cgcaAGCCCAGCC---UCU--UGUGGUG-GUC- -5'
16206 3' -54.8 NC_004065.1 + 157150 0.76 0.57053
Target:  5'- cGCGUagUUGGuGUUGGAGucguACACCACCAa -3'
miRNA:   3'- -CGCA--AGCC-CAGCCUCu---UGUGGUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.