miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 3' -54.8 NC_004065.1 + 228064 0.66 0.979986
Target:  5'- aGCG-UCGGGccucccucaucaCGGGGGGCACCuACCu- -3'
miRNA:   3'- -CGCaAGCCCa-----------GCCUCUUGUGG-UGGuc -5'
16206 3' -54.8 NC_004065.1 + 210707 0.66 0.984243
Target:  5'- uGCGUccucCGGGUaGGAuGACGCCcgucGCCGGa -3'
miRNA:   3'- -CGCAa---GCCCAgCCUcUUGUGG----UGGUC- -5'
16206 3' -54.8 NC_004065.1 + 203834 0.7 0.872341
Target:  5'- gGCGUUCGaGGUCGaaaGGGACG-CGCCGGc -3'
miRNA:   3'- -CGCAAGC-CCAGCc--UCUUGUgGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 202934 0.7 0.879326
Target:  5'- gGCGUUCGGGguccUGGGGAgaggACGCgACaCAGu -3'
miRNA:   3'- -CGCAAGCCCa---GCCUCU----UGUGgUG-GUC- -5'
16206 3' -54.8 NC_004065.1 + 199198 0.71 0.857767
Target:  5'- uCGUcgaGGGUCGcGAGGACGCgCACCGc -3'
miRNA:   3'- cGCAag-CCCAGC-CUCUUGUG-GUGGUc -5'
16206 3' -54.8 NC_004065.1 + 198743 0.73 0.74677
Target:  5'- cGCGUgucguaCGGGUCGGAGGucCGuCCGCaCAGa -3'
miRNA:   3'- -CGCAa-----GCCCAGCCUCUu-GU-GGUG-GUC- -5'
16206 3' -54.8 NC_004065.1 + 198467 1.1 0.005584
Target:  5'- cGCGUUCGGGUCGGAGAACACCACCAGc -3'
miRNA:   3'- -CGCAAGCCCAGCCUCUUGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 198243 0.66 0.97591
Target:  5'- ---aUCGGGggcgaGGAGGACACCAUa-- -3'
miRNA:   3'- cgcaAGCCCag---CCUCUUGUGGUGguc -5'
16206 3' -54.8 NC_004065.1 + 190314 0.69 0.905162
Target:  5'- gGCGUUCGGaGauaCGGuGAGgACCACCu- -3'
miRNA:   3'- -CGCAAGCC-Ca--GCCuCUUgUGGUGGuc -5'
16206 3' -54.8 NC_004065.1 + 185475 0.77 0.551038
Target:  5'- gGUGgugCGGGUCgGGAGGcaGCGCCGCCAc -3'
miRNA:   3'- -CGCaa-GCCCAG-CCUCU--UGUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 176706 0.77 0.541367
Target:  5'- cGCGUagCGGGUUGGAGAACGUCAUCGu -3'
miRNA:   3'- -CGCAa-GCCCAGCCUCUUGUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 170430 0.66 0.984243
Target:  5'- uGCGg-CGGaUCGacgaAGGACGCCGCCGGa -3'
miRNA:   3'- -CGCaaGCCcAGCc---UCUUGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 164781 0.73 0.72783
Target:  5'- -aGgaCGGGUUGGAGAuugucgagacggGCGCCACCGc -3'
miRNA:   3'- cgCaaGCCCAGCCUCU------------UGUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 162481 0.66 0.980405
Target:  5'- cGCGgcCGGccaGGAcgagGAGCGCCACUAGg -3'
miRNA:   3'- -CGCaaGCCcagCCU----CUUGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 157150 0.76 0.57053
Target:  5'- cGCGUagUUGGuGUUGGAGucguACACCACCAa -3'
miRNA:   3'- -CGCA--AGCC-CAGCCUCu---UGUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 153611 0.7 0.892673
Target:  5'- ---aUCGGGUCGGcucGGGcgGCGCCACuCGGa -3'
miRNA:   3'- cgcaAGCCCAGCC---UCU--UGUGGUG-GUC- -5'
16206 3' -54.8 NC_004065.1 + 148799 0.68 0.932504
Target:  5'- aGUGUUCGGGUCGGG--ACAUgAUCu- -3'
miRNA:   3'- -CGCAAGCCCAGCCUcuUGUGgUGGuc -5'
16206 3' -54.8 NC_004065.1 + 148085 0.73 0.72783
Target:  5'- uGCGUcuguuUCGGcGUCGGAGAgaugguGCACCACg-- -3'
miRNA:   3'- -CGCA-----AGCC-CAGCCUCU------UGUGGUGguc -5'
16206 3' -54.8 NC_004065.1 + 147241 0.67 0.961453
Target:  5'- cCGgaUGGGUCGG----CGCCACCGGa -3'
miRNA:   3'- cGCaaGCCCAGCCucuuGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 146823 0.67 0.970703
Target:  5'- cGCGcaCGGGggacucGAGAGCggGCCGCCGGg -3'
miRNA:   3'- -CGCaaGCCCagc---CUCUUG--UGGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.