Results 41 - 54 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 68263 | 0.74 | 0.689085 |
Target: 5'- cGUGacCGGGUCGGccgaaGGAACcCCACCGGc -3' miRNA: 3'- -CGCaaGCCCAGCC-----UCUUGuGGUGGUC- -5' |
|||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 67655 | 0.67 | 0.961453 |
Target: 5'- cGCG-UCGGugauGUCGGGGAGCGgCGgCGGc -3' miRNA: 3'- -CGCaAGCC----CAGCCUCUUGUgGUgGUC- -5' |
|||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 65351 | 0.66 | 0.980405 |
Target: 5'- uGCGggUGGGUCGGucGGAucgaccugggcgACGCgCGCCGc -3' miRNA: 3'- -CGCaaGCCCAGCC--UCU------------UGUG-GUGGUc -5' |
|||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 64883 | 0.71 | 0.85019 |
Target: 5'- cGCGgcgCGcGUCGGAGAagaGCGgCGCCAGu -3' miRNA: 3'- -CGCaa-GCcCAGCCUCU---UGUgGUGGUC- -5' |
|||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 61161 | 0.67 | 0.964736 |
Target: 5'- gGCGUcgaagaUCGGGUUGGA----ACCGCCGa -3' miRNA: 3'- -CGCA------AGCCCAGCCUcuugUGGUGGUc -5' |
|||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 42692 | 0.67 | 0.970703 |
Target: 5'- cGCGUUCGgagcugcagaGGUCGGcGAGCGCUccuCCGc -3' miRNA: 3'- -CGCAAGC----------CCAGCCuCUUGUGGu--GGUc -5' |
|||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 41496 | 0.77 | 0.560761 |
Target: 5'- gGCG-UCGGGaCGGGGAGCGcgcgggcggucCCGCCAGa -3' miRNA: 3'- -CGCaAGCCCaGCCUCUUGU-----------GGUGGUC- -5' |
|||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 32517 | 0.67 | 0.957604 |
Target: 5'- cGCGgcCGGGucccUCGGAGAccuagccACACCcCCAc -3' miRNA: 3'- -CGCaaGCCC----AGCCUCU-------UGUGGuGGUc -5' |
|||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 26877 | 0.68 | 0.946221 |
Target: 5'- -gGUccUCGGGUCGcGAGGGCGgCAUgAGa -3' miRNA: 3'- cgCA--AGCCCAGC-CUCUUGUgGUGgUC- -5' |
|||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 24951 | 0.66 | 0.973399 |
Target: 5'- aCGaUCGcGUUGGAuGACACUACCAGu -3' miRNA: 3'- cGCaAGCcCAGCCUcUUGUGGUGGUC- -5' |
|||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 14357 | 0.7 | 0.865152 |
Target: 5'- aGUaUUCGGGaUCGG-GcGCACCACCAa -3' miRNA: 3'- -CGcAAGCCC-AGCCuCuUGUGGUGGUc -5' |
|||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 7444 | 0.68 | 0.941871 |
Target: 5'- cGUGgcagCGGGcgaGGAGAccuuggGCACCACCGa -3' miRNA: 3'- -CGCaa--GCCCag-CCUCU------UGUGGUGGUc -5' |
|||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 3364 | 0.66 | 0.980405 |
Target: 5'- uCGuUUCGGGgCGGuAGAACAgUugCAGa -3' miRNA: 3'- cGC-AAGCCCaGCC-UCUUGUgGugGUC- -5' |
|||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 500 | 0.68 | 0.937299 |
Target: 5'- cGCGUccgCGGGaaggCGGGGugaGGCGCCccGCCAGc -3' miRNA: 3'- -CGCAa--GCCCa---GCCUC---UUGUGG--UGGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home