miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 3' -54.8 NC_004065.1 + 162481 0.66 0.980405
Target:  5'- cGCGgcCGGccaGGAcgagGAGCGCCACUAGg -3'
miRNA:   3'- -CGCaaGCCcagCCU----CUUGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 500 0.68 0.937299
Target:  5'- cGCGUccgCGGGaaggCGGGGugaGGCGCCccGCCAGc -3'
miRNA:   3'- -CGCAa--GCCCa---GCCUC---UUGUGG--UGGUC- -5'
16206 3' -54.8 NC_004065.1 + 124521 0.67 0.957964
Target:  5'- cGCGUucUCGGGcaCGu---GCGCCACCAGg -3'
miRNA:   3'- -CGCA--AGCCCa-GCcucuUGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 67655 0.67 0.961453
Target:  5'- cGCG-UCGGugauGUCGGGGAGCGgCGgCGGc -3'
miRNA:   3'- -CGCaAGCC----CAGCCUCUUGUgGUgGUC- -5'
16206 3' -54.8 NC_004065.1 + 99496 0.67 0.961453
Target:  5'- gGCGcaugCGcGGUCGGuGAugugcaACACCACCu- -3'
miRNA:   3'- -CGCaa--GC-CCAGCCuCU------UGUGGUGGuc -5'
16206 3' -54.8 NC_004065.1 + 147241 0.67 0.961453
Target:  5'- cCGgaUGGGUCGG----CGCCACCGGa -3'
miRNA:   3'- cGCaaGCCCAGCCucuuGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 61161 0.67 0.964736
Target:  5'- gGCGUcgaagaUCGGGUUGGA----ACCGCCGa -3'
miRNA:   3'- -CGCA------AGCCCAGCCUcuugUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 42692 0.67 0.970703
Target:  5'- cGCGUUCGgagcugcagaGGUCGGcGAGCGCUccuCCGc -3'
miRNA:   3'- -CGCAAGC----------CCAGCCuCUUGUGGu--GGUc -5'
16206 3' -54.8 NC_004065.1 + 228064 0.66 0.979986
Target:  5'- aGCG-UCGGGccucccucaucaCGGGGGGCACCuACCu- -3'
miRNA:   3'- -CGCaAGCCCa-----------GCCUCUUGUGG-UGGuc -5'
16206 3' -54.8 NC_004065.1 + 129976 0.68 0.937299
Target:  5'- aGCGa--GGGUcaggcucugCGGAGGAUACCGCCc- -3'
miRNA:   3'- -CGCaagCCCA---------GCCUCUUGUGGUGGuc -5'
16206 3' -54.8 NC_004065.1 + 116761 0.69 0.922239
Target:  5'- gGCGUacaUCGGGUCcGAGAucgccuucgguuGCGCgGCCAc -3'
miRNA:   3'- -CGCA---AGCCCAGcCUCU------------UGUGgUGGUc -5'
16206 3' -54.8 NC_004065.1 + 108328 0.7 0.879326
Target:  5'- aGCGUgCGGGgcgaCGG-GGGCAUCugCAGa -3'
miRNA:   3'- -CGCAaGCCCa---GCCuCUUGUGGugGUC- -5'
16206 3' -54.8 NC_004065.1 + 176706 0.77 0.541367
Target:  5'- cGCGUagCGGGUUGGAGAACGUCAUCGu -3'
miRNA:   3'- -CGCAa-GCCCAGCCUCUUGUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 41496 0.77 0.560761
Target:  5'- gGCG-UCGGGaCGGGGAGCGcgcgggcggucCCGCCAGa -3'
miRNA:   3'- -CGCaAGCCCaGCCUCUUGU-----------GGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 71940 0.75 0.649627
Target:  5'- gGUGgcCuGGUCGGAGGcgACGCCGCCGGu -3'
miRNA:   3'- -CGCaaGcCCAGCCUCU--UGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 164781 0.73 0.72783
Target:  5'- -aGgaCGGGUUGGAGAuugucgagacggGCGCCACCGc -3'
miRNA:   3'- cgCaaGCCCAGCCUCU------------UGUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 198743 0.73 0.74677
Target:  5'- cGCGUgucguaCGGGUCGGAGGucCGuCCGCaCAGa -3'
miRNA:   3'- -CGCAa-----GCCCAGCCUCUu-GU-GGUG-GUC- -5'
16206 3' -54.8 NC_004065.1 + 64883 0.71 0.85019
Target:  5'- cGCGgcgCGcGUCGGAGAagaGCGgCGCCAGu -3'
miRNA:   3'- -CGCaa-GCcCAGCCUCU---UGUgGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 14357 0.7 0.865152
Target:  5'- aGUaUUCGGGaUCGG-GcGCACCACCAa -3'
miRNA:   3'- -CGcAAGCCC-AGCCuCuUGUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 101415 0.7 0.879326
Target:  5'- aGgGUgcuggUGaGGUCGGAGAAgagguCGCCGCCGGc -3'
miRNA:   3'- -CgCAa----GC-CCAGCCUCUU-----GUGGUGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.