Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16206 | 3' | -54.8 | NC_004065.1 | + | 185475 | 0.77 | 0.551038 |
Target: 5'- gGUGgugCGGGUCgGGAGGcaGCGCCGCCAc -3' miRNA: 3'- -CGCaa-GCCCAG-CCUCU--UGUGGUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 142471 | 0.67 | 0.964736 |
Target: 5'- uGUGUaUGGGgCGGuGGACGCgaGCCAGg -3' miRNA: 3'- -CGCAaGCCCaGCCuCUUGUGg-UGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 24951 | 0.66 | 0.973399 |
Target: 5'- aCGaUCGcGUUGGAuGACACUACCAGu -3' miRNA: 3'- cGCaAGCcCAGCCUcUUGUGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 210707 | 0.66 | 0.984243 |
Target: 5'- uGCGUccucCGGGUaGGAuGACGCCcgucGCCGGa -3' miRNA: 3'- -CGCAa---GCCCAgCCUcUUGUGG----UGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 148085 | 0.73 | 0.72783 |
Target: 5'- uGCGUcuguuUCGGcGUCGGAGAgaugguGCACCACg-- -3' miRNA: 3'- -CGCA-----AGCC-CAGCCUCU------UGUGGUGguc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 120338 | 0.71 | 0.842427 |
Target: 5'- cGCGaucUCGGcggcgaugucGUCGGAGAGCGCCcggaggacccuGCCGGa -3' miRNA: 3'- -CGCa--AGCC----------CAGCCUCUUGUGG-----------UGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 203834 | 0.7 | 0.872341 |
Target: 5'- gGCGUUCGaGGUCGaaaGGGACG-CGCCGGc -3' miRNA: 3'- -CGCAAGC-CCAGCc--UCUUGUgGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 202934 | 0.7 | 0.879326 |
Target: 5'- gGCGUUCGGGguccUGGGGAgaggACGCgACaCAGu -3' miRNA: 3'- -CGCAAGCCCa---GCCUCU----UGUGgUG-GUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 148799 | 0.68 | 0.932504 |
Target: 5'- aGUGUUCGGGUCGGG--ACAUgAUCu- -3' miRNA: 3'- -CGCAAGCCCAGCCUcuUGUGgUGGuc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 120422 | 0.67 | 0.961453 |
Target: 5'- cGCGgccCGGGggucgagcgCGGccuGAuACGCCGCCAGg -3' miRNA: 3'- -CGCaa-GCCCa--------GCCu--CU-UGUGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 26877 | 0.68 | 0.946221 |
Target: 5'- -gGUccUCGGGUCGcGAGGGCGgCAUgAGa -3' miRNA: 3'- cgCA--AGCCCAGC-CUCUUGUgGUGgUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 190314 | 0.69 | 0.905162 |
Target: 5'- gGCGUUCGGaGauaCGGuGAGgACCACCu- -3' miRNA: 3'- -CGCAAGCC-Ca--GCCuCUUgUGGUGGuc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 157150 | 0.76 | 0.57053 |
Target: 5'- cGCGUagUUGGuGUUGGAGucguACACCACCAa -3' miRNA: 3'- -CGCA--AGCC-CAGCCUCu---UGUGGUGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 32517 | 0.67 | 0.957604 |
Target: 5'- cGCGgcCGGGucccUCGGAGAccuagccACACCcCCAc -3' miRNA: 3'- -CGCaaGCCC----AGCCUCU-------UGUGGuGGUc -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 68263 | 0.74 | 0.689085 |
Target: 5'- cGUGacCGGGUCGGccgaaGGAACcCCACCGGc -3' miRNA: 3'- -CGCaaGCCCAGCC-----UCUUGuGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 153611 | 0.7 | 0.892673 |
Target: 5'- ---aUCGGGUCGGcucGGGcgGCGCCACuCGGa -3' miRNA: 3'- cgcaAGCCCAGCC---UCU--UGUGGUG-GUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 95294 | 0.67 | 0.961453 |
Target: 5'- cGCGcgUCGGGUCuGGAGAugAUCuugaaGCaCAGc -3' miRNA: 3'- -CGCa-AGCCCAG-CCUCUugUGG-----UG-GUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 146823 | 0.67 | 0.970703 |
Target: 5'- cGCGcaCGGGggacucGAGAGCggGCCGCCGGg -3' miRNA: 3'- -CGCaaGCCCagc---CUCUUG--UGGUGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 80843 | 0.74 | 0.71824 |
Target: 5'- aGCGagCGGaUCGGAcGAGCGCCagGCCAGg -3' miRNA: 3'- -CGCaaGCCcAGCCU-CUUGUGG--UGGUC- -5' |
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16206 | 3' | -54.8 | NC_004065.1 | + | 199198 | 0.71 | 0.857767 |
Target: 5'- uCGUcgaGGGUCGcGAGGACGCgCACCGc -3' miRNA: 3'- cGCAag-CCCAGC-CUCUUGUG-GUGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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