miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 3' -54.8 NC_004065.1 + 116761 0.69 0.922239
Target:  5'- gGCGUacaUCGGGUCcGAGAucgccuucgguuGCGCgGCCAc -3'
miRNA:   3'- -CGCA---AGCCCAGcCUCU------------UGUGgUGGUc -5'
16206 3' -54.8 NC_004065.1 + 129976 0.68 0.937299
Target:  5'- aGCGa--GGGUcaggcucugCGGAGGAUACCGCCc- -3'
miRNA:   3'- -CGCaagCCCA---------GCCUCUUGUGGUGGuc -5'
16206 3' -54.8 NC_004065.1 + 500 0.68 0.937299
Target:  5'- cGCGUccgCGGGaaggCGGGGugaGGCGCCccGCCAGc -3'
miRNA:   3'- -CGCAa--GCCCa---GCCUC---UUGUGG--UGGUC- -5'
16206 3' -54.8 NC_004065.1 + 170430 0.66 0.984243
Target:  5'- uGCGg-CGGaUCGacgaAGGACGCCGCCGGa -3'
miRNA:   3'- -CGCaaGCCcAGCc---UCUUGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 162481 0.66 0.980405
Target:  5'- cGCGgcCGGccaGGAcgagGAGCGCCACUAGg -3'
miRNA:   3'- -CGCaaGCCcagCCU----CUUGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 228064 0.66 0.979986
Target:  5'- aGCG-UCGGGccucccucaucaCGGGGGGCACCuACCu- -3'
miRNA:   3'- -CGCaAGCCCa-----------GCCUCUUGUGG-UGGuc -5'
16206 3' -54.8 NC_004065.1 + 130890 0.66 0.98182
Target:  5'- gGCGUga-GGUCcucaugagguguguGGAGcuCGCCGCCAGg -3'
miRNA:   3'- -CGCAagcCCAG--------------CCUCuuGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 42692 0.67 0.970703
Target:  5'- cGCGUUCGgagcugcagaGGUCGGcGAGCGCUccuCCGc -3'
miRNA:   3'- -CGCAAGC----------CCAGCCuCUUGUGGu--GGUc -5'
16206 3' -54.8 NC_004065.1 + 61161 0.67 0.964736
Target:  5'- gGCGUcgaagaUCGGGUUGGA----ACCGCCGa -3'
miRNA:   3'- -CGCA------AGCCCAGCCUcuugUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 147241 0.67 0.961453
Target:  5'- cCGgaUGGGUCGG----CGCCACCGGa -3'
miRNA:   3'- cGCaaGCCCAGCCucuuGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 99496 0.67 0.961453
Target:  5'- gGCGcaugCGcGGUCGGuGAugugcaACACCACCu- -3'
miRNA:   3'- -CGCaa--GC-CCAGCCuCU------UGUGGUGGuc -5'
16206 3' -54.8 NC_004065.1 + 67655 0.67 0.961453
Target:  5'- cGCG-UCGGugauGUCGGGGAGCGgCGgCGGc -3'
miRNA:   3'- -CGCaAGCC----CAGCCUCUUGUgGUgGUC- -5'
16206 3' -54.8 NC_004065.1 + 124521 0.67 0.957964
Target:  5'- cGCGUucUCGGGcaCGu---GCGCCACCAGg -3'
miRNA:   3'- -CGCA--AGCCCa-GCcucuUGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 198467 1.1 0.005584
Target:  5'- cGCGUUCGGGUCGGAGAACACCACCAGc -3'
miRNA:   3'- -CGCAAGCCCAGCCUCUUGUGGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.