miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 5' -64.4 NC_004065.1 + 210843 0.65 0.681707
Target:  5'- gGCCGGaGGU-GUCCCGCcucggcagaaagcGGCAucggcagcauCGUCGu -3'
miRNA:   3'- aCGGCC-CCAuCGGGGCG-------------CCGU----------GCAGC- -5'
16206 5' -64.4 NC_004065.1 + 136408 0.65 0.678916
Target:  5'- aGCCGGGGagcugguccugggGGCCCgGUGaGCcgAgGUCGg -3'
miRNA:   3'- aCGGCCCCa------------UCGGGgCGC-CG--UgCAGC- -5'
16206 5' -64.4 NC_004065.1 + 196630 0.66 0.677054
Target:  5'- cGCCGGGGcgagcgccucgagaGGCUCCGCGcGCAgaaGaUCGg -3'
miRNA:   3'- aCGGCCCCa-------------UCGGGGCGC-CGUg--C-AGC- -5'
16206 5' -64.4 NC_004065.1 + 186881 0.66 0.673327
Target:  5'- cGCCGGGGgGGCCaucuaCG-GGCACa--- -3'
miRNA:   3'- aCGGCCCCaUCGGg----GCgCCGUGcagc -5'
16206 5' -64.4 NC_004065.1 + 117172 0.66 0.663989
Target:  5'- cGCCgacGGGGUccGCCCCuGgGGCagGCGUUGc -3'
miRNA:   3'- aCGG---CCCCAu-CGGGG-CgCCG--UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 27646 0.66 0.663989
Target:  5'- cUGCgCGGGG--GUgCUGCGGCcCGUCa -3'
miRNA:   3'- -ACG-GCCCCauCGgGGCGCCGuGCAGc -5'
16206 5' -64.4 NC_004065.1 + 114010 0.66 0.663989
Target:  5'- cGUCGGcagAGagcugcCCCCGCGGCgcACGUCGg -3'
miRNA:   3'- aCGGCCccaUC------GGGGCGCCG--UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 31460 0.66 0.663054
Target:  5'- gGaCGGcGGUAGCCagggagaCCGCGGCuCGUUa -3'
miRNA:   3'- aCgGCC-CCAUCGG-------GGCGCCGuGCAGc -5'
16206 5' -64.4 NC_004065.1 + 27147 0.66 0.65463
Target:  5'- aGCCGGGuccgAGCaacacacgCCGCGGCAaaacgcccugcCGUCGu -3'
miRNA:   3'- aCGGCCCca--UCGg-------GGCGCCGU-----------GCAGC- -5'
16206 5' -64.4 NC_004065.1 + 166158 0.66 0.65463
Target:  5'- gUGCgGGuGGUGGUCCuucgcgaaCGCGGCcauggcgaACGUCa -3'
miRNA:   3'- -ACGgCC-CCAUCGGG--------GCGCCG--------UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 65835 0.66 0.645256
Target:  5'- aUGCCGGcGG-AGaUCCGCGcGCACGaCGa -3'
miRNA:   3'- -ACGGCC-CCaUCgGGGCGC-CGUGCaGC- -5'
16206 5' -64.4 NC_004065.1 + 40257 0.66 0.645256
Target:  5'- -cCCGGGGUuucuggggcGCCCCGCcgGGUACGa-- -3'
miRNA:   3'- acGGCCCCAu--------CGGGGCG--CCGUGCagc -5'
16206 5' -64.4 NC_004065.1 + 6242 0.66 0.645256
Target:  5'- gGCUGGaGGUAGUCCUGUcGUGCGgCGg -3'
miRNA:   3'- aCGGCC-CCAUCGGGGCGcCGUGCaGC- -5'
16206 5' -64.4 NC_004065.1 + 99969 0.66 0.635873
Target:  5'- cGCCGcGGcGU-GCUcgggCCGCGGguCGUCGu -3'
miRNA:   3'- aCGGC-CC-CAuCGG----GGCGCCguGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 163295 0.66 0.626487
Target:  5'- cGCCGGGGU----CCGaCGGCACGggCGc -3'
miRNA:   3'- aCGGCCCCAucggGGC-GCCGUGCa-GC- -5'
16206 5' -64.4 NC_004065.1 + 229153 0.66 0.626487
Target:  5'- aUGCCGgcGGGgcGCCCuCGCccGGCA-GUCa -3'
miRNA:   3'- -ACGGC--CCCauCGGG-GCG--CCGUgCAGc -5'
16206 5' -64.4 NC_004065.1 + 201817 0.66 0.626487
Target:  5'- uUGCCGGGcGUccgcAGCUCgaucaccgaguUGCGGUACGUgGa -3'
miRNA:   3'- -ACGGCCC-CA----UCGGG-----------GCGCCGUGCAgC- -5'
16206 5' -64.4 NC_004065.1 + 181987 0.67 0.607733
Target:  5'- cGUgGGGGaugAGgaCCCGCaGUACGUCGu -3'
miRNA:   3'- aCGgCCCCa--UCg-GGGCGcCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 114801 0.67 0.607733
Target:  5'- -cCCGGcGGUaagcAGCCCgGCGGUAugcccCGUCGc -3'
miRNA:   3'- acGGCC-CCA----UCGGGgCGCCGU-----GCAGC- -5'
16206 5' -64.4 NC_004065.1 + 119809 0.67 0.602117
Target:  5'- cGCCGGcGaAGCCCUcuucccucucgacggGCGGCggcGCGUCGc -3'
miRNA:   3'- aCGGCCcCaUCGGGG---------------CGCCG---UGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.