Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16206 | 5' | -64.4 | NC_004065.1 | + | 136408 | 0.65 | 0.678916 |
Target: 5'- aGCCGGGGagcugguccugggGGCCCgGUGaGCcgAgGUCGg -3' miRNA: 3'- aCGGCCCCa------------UCGGGgCGC-CG--UgCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 210843 | 0.65 | 0.681707 |
Target: 5'- gGCCGGaGGU-GUCCCGCcucggcagaaagcGGCAucggcagcauCGUCGu -3' miRNA: 3'- aCGGCC-CCAuCGGGGCG-------------CCGU----------GCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 40257 | 0.66 | 0.645256 |
Target: 5'- -cCCGGGGUuucuggggcGCCCCGCcgGGUACGa-- -3' miRNA: 3'- acGGCCCCAu--------CGGGGCG--CCGUGCagc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 114010 | 0.66 | 0.663989 |
Target: 5'- cGUCGGcagAGagcugcCCCCGCGGCgcACGUCGg -3' miRNA: 3'- aCGGCCccaUC------GGGGCGCCG--UGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 166158 | 0.66 | 0.65463 |
Target: 5'- gUGCgGGuGGUGGUCCuucgcgaaCGCGGCcauggcgaACGUCa -3' miRNA: 3'- -ACGgCC-CCAUCGGG--------GCGCCG--------UGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 6242 | 0.66 | 0.645256 |
Target: 5'- gGCUGGaGGUAGUCCUGUcGUGCGgCGg -3' miRNA: 3'- aCGGCC-CCAUCGGGGCGcCGUGCaGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 186881 | 0.66 | 0.673327 |
Target: 5'- cGCCGGGGgGGCCaucuaCG-GGCACa--- -3' miRNA: 3'- aCGGCCCCaUCGGg----GCgCCGUGcagc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 117172 | 0.66 | 0.663989 |
Target: 5'- cGCCgacGGGGUccGCCCCuGgGGCagGCGUUGc -3' miRNA: 3'- aCGG---CCCCAu-CGGGG-CgCCG--UGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 27646 | 0.66 | 0.663989 |
Target: 5'- cUGCgCGGGG--GUgCUGCGGCcCGUCa -3' miRNA: 3'- -ACG-GCCCCauCGgGGCGCCGuGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 31460 | 0.66 | 0.663054 |
Target: 5'- gGaCGGcGGUAGCCagggagaCCGCGGCuCGUUa -3' miRNA: 3'- aCgGCC-CCAUCGG-------GGCGCCGuGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 196630 | 0.66 | 0.677054 |
Target: 5'- cGCCGGGGcgagcgccucgagaGGCUCCGCGcGCAgaaGaUCGg -3' miRNA: 3'- aCGGCCCCa-------------UCGGGGCGC-CGUg--C-AGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 229153 | 0.66 | 0.626487 |
Target: 5'- aUGCCGgcGGGgcGCCCuCGCccGGCA-GUCa -3' miRNA: 3'- -ACGGC--CCCauCGGG-GCG--CCGUgCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 201817 | 0.66 | 0.626487 |
Target: 5'- uUGCCGGGcGUccgcAGCUCgaucaccgaguUGCGGUACGUgGa -3' miRNA: 3'- -ACGGCCC-CA----UCGGG-----------GCGCCGUGCAgC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 99969 | 0.66 | 0.635873 |
Target: 5'- cGCCGcGGcGU-GCUcgggCCGCGGguCGUCGu -3' miRNA: 3'- aCGGC-CC-CAuCGG----GGCGCCguGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 65835 | 0.66 | 0.645256 |
Target: 5'- aUGCCGGcGG-AGaUCCGCGcGCACGaCGa -3' miRNA: 3'- -ACGGCC-CCaUCgGGGCGC-CGUGCaGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 27147 | 0.66 | 0.65463 |
Target: 5'- aGCCGGGuccgAGCaacacacgCCGCGGCAaaacgcccugcCGUCGu -3' miRNA: 3'- aCGGCCCca--UCGg-------GGCGCCGU-----------GCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 163295 | 0.66 | 0.626487 |
Target: 5'- cGCCGGGGU----CCGaCGGCACGggCGc -3' miRNA: 3'- aCGGCCCCAucggGGC-GCCGUGCa-GC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 114801 | 0.67 | 0.607733 |
Target: 5'- -cCCGGcGGUaagcAGCCCgGCGGUAugcccCGUCGc -3' miRNA: 3'- acGGCC-CCA----UCGGGgCGCCGU-----GCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 56568 | 0.67 | 0.598376 |
Target: 5'- gUGCUGGcGUcgAGCgCCGCcaccGGUACGUCGa -3' miRNA: 3'- -ACGGCCcCA--UCGgGGCG----CCGUGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 181987 | 0.67 | 0.607733 |
Target: 5'- cGUgGGGGaugAGgaCCCGCaGUACGUCGu -3' miRNA: 3'- aCGgCCCCa--UCg-GGGCGcCGUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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