Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 16206 | 5' | -64.4 | NC_004065.1 | + | 109865 | 0.73 | 0.292478 |
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Target: 5'- gUGCCGGGcggugccaccGgcGUCgCCGCGGCcGCGUCGg -3' miRNA: 3'- -ACGGCCC----------CauCGG-GGCGCCG-UGCAGC- -5' |
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| 16206 | 5' | -64.4 | NC_004065.1 | + | 34450 | 0.73 | 0.292478 |
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Target: 5'- gGCCGGGGgacGCgaauCCUGCGGCGCGauggCGg -3' miRNA: 3'- aCGGCCCCau-CG----GGGCGCCGUGCa---GC- -5' |
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| 16206 | 5' | -64.4 | NC_004065.1 | + | 4278 | 0.73 | 0.286284 |
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Target: 5'- cUGCUgGGGGUAGCCaCGaCGGCGUGUCGu -3' miRNA: 3'- -ACGG-CCCCAUCGGgGC-GCCGUGCAGC- -5' |
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| 16206 | 5' | -64.4 | NC_004065.1 | + | 168635 | 0.73 | 0.268325 |
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Target: 5'- gUGCCGcGGGcggAGCCggCGCGGCgACGUCGu -3' miRNA: 3'- -ACGGC-CCCa--UCGGg-GCGCCG-UGCAGC- -5' |
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| 16206 | 5' | -64.4 | NC_004065.1 | + | 146594 | 0.74 | 0.256865 |
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Target: 5'- -aUCGGGGUGGCCaUCGgGGC-CGUCGg -3' miRNA: 3'- acGGCCCCAUCGG-GGCgCCGuGCAGC- -5' |
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| 16206 | 5' | -64.4 | NC_004065.1 | + | 112851 | 0.74 | 0.245808 |
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Target: 5'- cUGCCccaGGGGcGGaCCCCGuCGGCGCuGUCGg -3' miRNA: 3'- -ACGG---CCCCaUC-GGGGC-GCCGUG-CAGC- -5' |
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| 16206 | 5' | -64.4 | NC_004065.1 | + | 90127 | 0.77 | 0.167092 |
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Target: 5'- cGCCGGccGGaGGCCCCGCGGCcaccuCGUCc -3' miRNA: 3'- aCGGCC--CCaUCGGGGCGCCGu----GCAGc -5' |
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| 16206 | 5' | -64.4 | NC_004065.1 | + | 6736 | 0.77 | 0.171018 |
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Target: 5'- -aUCGGGGUAGCCgCgGCGGCACucggGUCGg -3' miRNA: 3'- acGGCCCCAUCGG-GgCGCCGUG----CAGC- -5' |
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| 16206 | 5' | -64.4 | NC_004065.1 | + | 102560 | 0.84 | 0.051027 |
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Target: 5'- cGCCGGGGUcgGGUCCCGCGGCcaucaGCGUCc -3' miRNA: 3'- aCGGCCCCA--UCGGGGCGCCG-----UGCAGc -5' |
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| 16206 | 5' | -64.4 | NC_004065.1 | + | 198501 | 1.07 | 0.00123 |
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Target: 5'- aUGCCGGGGUAGCCCCGCGGCACGUCGc -3' miRNA: 3'- -ACGGCCCCAUCGGGGCGCCGUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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