miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 5' -64.4 NC_004065.1 + 201381 0.68 0.537388
Target:  5'- cGCCGGGGgguGCCacguCgacgcacagaugcguCGCGGCGgGUCGg -3'
miRNA:   3'- aCGGCCCCau-CGG----G---------------GCGCCGUgCAGC- -5'
16206 5' -64.4 NC_004065.1 + 177094 0.68 0.524704
Target:  5'- cGCaCGGGGUGGCaCCCuCGGUGucUGUCu -3'
miRNA:   3'- aCG-GCCCCAUCG-GGGcGCCGU--GCAGc -5'
16206 5' -64.4 NC_004065.1 + 191952 0.68 0.533753
Target:  5'- aGCCucacGGGccuguuGUCCgGCGGCACGUUGg -3'
miRNA:   3'- aCGGc---CCCau----CGGGgCGCCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 94956 0.67 0.57973
Target:  5'- cGCUGcGGGgcccGCUCCGCGGCugccGCGUaCGc -3'
miRNA:   3'- aCGGC-CCCau--CGGGGCGCCG----UGCA-GC- -5'
16206 5' -64.4 NC_004065.1 + 86906 0.67 0.57973
Target:  5'- cGCCGGucUcGCCCUcgGCGGCgcgcGCGUCGa -3'
miRNA:   3'- aCGGCCccAuCGGGG--CGCCG----UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 181987 0.67 0.607733
Target:  5'- cGUgGGGGaugAGgaCCCGCaGUACGUCGu -3'
miRNA:   3'- aCGgCCCCa--UCg-GGGCGcCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 139646 0.67 0.58904
Target:  5'- cGCCGGcuccaAGCUgUGCGGCGCGUgCGg -3'
miRNA:   3'- aCGGCCcca--UCGGgGCGCCGUGCA-GC- -5'
16206 5' -64.4 NC_004065.1 + 56568 0.67 0.598376
Target:  5'- gUGCUGGcGUcgAGCgCCGCcaccGGUACGUCGa -3'
miRNA:   3'- -ACGGCCcCA--UCGgGGCG----CCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 119809 0.67 0.602117
Target:  5'- cGCCGGcGaAGCCCUcuucccucucgacggGCGGCggcGCGUCGc -3'
miRNA:   3'- aCGGCCcCaUCGGGG---------------CGCCG---UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 198358 0.67 0.585313
Target:  5'- cGCCGGGGUccuucgccaggaacAGCgCCGacgucccguagccCGGCGuCGUCa -3'
miRNA:   3'- aCGGCCCCA--------------UCGgGGC-------------GCCGU-GCAGc -5'
16206 5' -64.4 NC_004065.1 + 150718 0.67 0.58904
Target:  5'- cGCCGGuGGgaGGCCCa--GGC-CGUCGa -3'
miRNA:   3'- aCGGCC-CCa-UCGGGgcgCCGuGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 91834 0.67 0.598376
Target:  5'- aGCgGGGGUcguucuGGUcgCCCGCGGCACc--- -3'
miRNA:   3'- aCGgCCCCA------UCG--GGGCGCCGUGcagc -5'
16206 5' -64.4 NC_004065.1 + 114801 0.67 0.607733
Target:  5'- -cCCGGcGGUaagcAGCCCgGCGGUAugcccCGUCGc -3'
miRNA:   3'- acGGCC-CCA----UCGGGgCGCCGU-----GCAGC- -5'
16206 5' -64.4 NC_004065.1 + 31460 0.66 0.663054
Target:  5'- gGaCGGcGGUAGCCagggagaCCGCGGCuCGUUa -3'
miRNA:   3'- aCgGCC-CCAUCGG-------GGCGCCGuGCAGc -5'
16206 5' -64.4 NC_004065.1 + 27147 0.66 0.65463
Target:  5'- aGCCGGGuccgAGCaacacacgCCGCGGCAaaacgcccugcCGUCGu -3'
miRNA:   3'- aCGGCCCca--UCGg-------GGCGCCGU-----------GCAGC- -5'
16206 5' -64.4 NC_004065.1 + 65835 0.66 0.645256
Target:  5'- aUGCCGGcGG-AGaUCCGCGcGCACGaCGa -3'
miRNA:   3'- -ACGGCC-CCaUCgGGGCGC-CGUGCaGC- -5'
16206 5' -64.4 NC_004065.1 + 99969 0.66 0.635873
Target:  5'- cGCCGcGGcGU-GCUcgggCCGCGGguCGUCGu -3'
miRNA:   3'- aCGGC-CC-CAuCGG----GGCGCCguGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 163295 0.66 0.626487
Target:  5'- cGCCGGGGU----CCGaCGGCACGggCGc -3'
miRNA:   3'- aCGGCCCCAucggGGC-GCCGUGCa-GC- -5'
16206 5' -64.4 NC_004065.1 + 229153 0.66 0.626487
Target:  5'- aUGCCGgcGGGgcGCCCuCGCccGGCA-GUCa -3'
miRNA:   3'- -ACGGC--CCCauCGGG-GCG--CCGUgCAGc -5'
16206 5' -64.4 NC_004065.1 + 27646 0.66 0.663989
Target:  5'- cUGCgCGGGG--GUgCUGCGGCcCGUCa -3'
miRNA:   3'- -ACG-GCCCCauCGgGGCGCCGuGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.