Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16206 | 5' | -64.4 | NC_004065.1 | + | 163431 | 0.7 | 0.397879 |
Target: 5'- cGCCGcGGUGGCCgCCGCcGUGCaGUCGg -3' miRNA: 3'- aCGGCcCCAUCGG-GGCGcCGUG-CAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 208012 | 0.7 | 0.397879 |
Target: 5'- gGCCGGGuUAGUgCCgGCGGCGaugacCGUCGg -3' miRNA: 3'- aCGGCCCcAUCGgGG-CGCCGU-----GCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 108430 | 0.7 | 0.41366 |
Target: 5'- -aCCGGGG-GGUCCCG-GGC-CGUCGa -3' miRNA: 3'- acGGCCCCaUCGGGGCgCCGuGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 197788 | 0.7 | 0.41366 |
Target: 5'- cGCCGGuguccgcguuGGUcaccAGCgCCCGCGGCgccACGUUGg -3' miRNA: 3'- aCGGCC----------CCA----UCG-GGGCGCCG---UGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 53868 | 0.7 | 0.42982 |
Target: 5'- cGCCGGGaUGGCCacuCCGuUGGCGCGaCGg -3' miRNA: 3'- aCGGCCCcAUCGG---GGC-GCCGUGCaGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 135070 | 0.7 | 0.446345 |
Target: 5'- aGCCGcGGaGcgGGCCCCGCaGCGCcaguaGUCGg -3' miRNA: 3'- aCGGC-CC-Ca-UCGGGGCGcCGUG-----CAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 202239 | 0.69 | 0.453896 |
Target: 5'- cUGCUGGGGcaggaGGCCCUccagacgGCGGCgcaGCGUCu -3' miRNA: 3'- -ACGGCCCCa----UCGGGG-------CGCCG---UGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 31693 | 0.69 | 0.463218 |
Target: 5'- aGCUgaGGGGgaucUGGCCguuCCGCGGCAUGUgCGa -3' miRNA: 3'- aCGG--CCCC----AUCGG---GGCGCCGUGCA-GC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 424 | 0.69 | 0.469203 |
Target: 5'- cGCCcggGGGGUGaacccccuggagccGCCCuCGCGGCguaACGUCc -3' miRNA: 3'- aCGG---CCCCAU--------------CGGG-GCGCCG---UGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 163358 | 0.69 | 0.48042 |
Target: 5'- gGCUGuGGGgGGCCCgGUGGCucuccaucaGCGUCa -3' miRNA: 3'- aCGGC-CCCaUCGGGgCGCCG---------UGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 149704 | 0.69 | 0.490013 |
Target: 5'- cGCCGGGGggccgcggccgcgccGGCCCUcggacucauaGCGGUccagcGCGUCGc -3' miRNA: 3'- aCGGCCCCa--------------UCGGGG----------CGCCG-----UGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 69583 | 0.69 | 0.497927 |
Target: 5'- aGCUGGGGUAagCCCGUGGCgACGg-- -3' miRNA: 3'- aCGGCCCCAUcgGGGCGCCG-UGCagc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 87160 | 0.68 | 0.506788 |
Target: 5'- aGaCCGGGGUcguccaggAGCCCCugcaccgcGCGGU-CGUCGc -3' miRNA: 3'- aC-GGCCCCA--------UCGGGG--------CGCCGuGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 177094 | 0.68 | 0.524704 |
Target: 5'- cGCaCGGGGUGGCaCCCuCGGUGucUGUCu -3' miRNA: 3'- aCG-GCCCCAUCG-GGGcGCCGU--GCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 167180 | 0.68 | 0.524704 |
Target: 5'- cUGCCGGGGgAGCCuUCGgGGUggGUgGg -3' miRNA: 3'- -ACGGCCCCaUCGG-GGCgCCGugCAgC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 94629 | 0.68 | 0.524704 |
Target: 5'- cUGaCGGGGUcgGGCgCgGcCGGCGCGUCa -3' miRNA: 3'- -ACgGCCCCA--UCGgGgC-GCCGUGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 191952 | 0.68 | 0.533753 |
Target: 5'- aGCCucacGGGccuguuGUCCgGCGGCACGUUGg -3' miRNA: 3'- aCGGc---CCCau----CGGGgCGCCGUGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 201381 | 0.68 | 0.537388 |
Target: 5'- cGCCGGGGgguGCCacguCgacgcacagaugcguCGCGGCGgGUCGg -3' miRNA: 3'- aCGGCCCCau-CGG----G---------------GCGCCGUgCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 157111 | 0.68 | 0.542856 |
Target: 5'- cGCCGGGGgcGCCUucaGCGGgggcaucauCGCGUUc -3' miRNA: 3'- aCGGCCCCauCGGGg--CGCC---------GUGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 106123 | 0.68 | 0.549259 |
Target: 5'- gGCCuGGGGUAcggggcgacgacguGCacggcgcaCCUGCGGCGCGUgCGg -3' miRNA: 3'- aCGG-CCCCAU--------------CG--------GGGCGCCGUGCA-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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