miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 5' -64.4 NC_004065.1 + 91834 0.67 0.598376
Target:  5'- aGCgGGGGUcguucuGGUcgCCCGCGGCACc--- -3'
miRNA:   3'- aCGgCCCCA------UCG--GGGCGCCGUGcagc -5'
16206 5' -64.4 NC_004065.1 + 56568 0.67 0.598376
Target:  5'- gUGCUGGcGUcgAGCgCCGCcaccGGUACGUCGa -3'
miRNA:   3'- -ACGGCCcCA--UCGgGGCG----CCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 139646 0.67 0.58904
Target:  5'- cGCCGGcuccaAGCUgUGCGGCGCGUgCGg -3'
miRNA:   3'- aCGGCCcca--UCGGgGCGCCGUGCA-GC- -5'
16206 5' -64.4 NC_004065.1 + 150718 0.67 0.58904
Target:  5'- cGCCGGuGGgaGGCCCa--GGC-CGUCGa -3'
miRNA:   3'- aCGGCC-CCa-UCGGGgcgCCGuGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 198358 0.67 0.585313
Target:  5'- cGCCGGGGUccuucgccaggaacAGCgCCGacgucccguagccCGGCGuCGUCa -3'
miRNA:   3'- aCGGCCCCA--------------UCGgGGC-------------GCCGU-GCAGc -5'
16206 5' -64.4 NC_004065.1 + 86906 0.67 0.57973
Target:  5'- cGCCGGucUcGCCCUcgGCGGCgcgcGCGUCGa -3'
miRNA:   3'- aCGGCCccAuCGGGG--CGCCG----UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 94956 0.67 0.57973
Target:  5'- cGCUGcGGGgcccGCUCCGCGGCugccGCGUaCGc -3'
miRNA:   3'- aCGGC-CCCau--CGGGGCGCCG----UGCA-GC- -5'
16206 5' -64.4 NC_004065.1 + 201530 0.68 0.56121
Target:  5'- aUGCgacGG-AGCUCCGCGGCGCuGUCGg -3'
miRNA:   3'- -ACGgccCCaUCGGGGCGCCGUG-CAGC- -5'
16206 5' -64.4 NC_004065.1 + 152918 0.68 0.56121
Target:  5'- aUGUCGGcGGcgcuGCCgCCGCGGCAaaUCGa -3'
miRNA:   3'- -ACGGCC-CCau--CGG-GGCGCCGUgcAGC- -5'
16206 5' -64.4 NC_004065.1 + 74633 0.68 0.55201
Target:  5'- cGCCGccaccgcuacccGGGUcugaGGUCcggaCCGCGGCGCGUCc -3'
miRNA:   3'- aCGGC------------CCCA----UCGG----GGCGCCGUGCAGc -5'
16206 5' -64.4 NC_004065.1 + 106123 0.68 0.549259
Target:  5'- gGCCuGGGGUAcggggcgacgacguGCacggcgcaCCUGCGGCGCGUgCGg -3'
miRNA:   3'- aCGG-CCCCAU--------------CG--------GGGCGCCGUGCA-GC- -5'
16206 5' -64.4 NC_004065.1 + 157111 0.68 0.542856
Target:  5'- cGCCGGGGgcGCCUucaGCGGgggcaucauCGCGUUc -3'
miRNA:   3'- aCGGCCCCauCGGGg--CGCC---------GUGCAGc -5'
16206 5' -64.4 NC_004065.1 + 201381 0.68 0.537388
Target:  5'- cGCCGGGGgguGCCacguCgacgcacagaugcguCGCGGCGgGUCGg -3'
miRNA:   3'- aCGGCCCCau-CGG----G---------------GCGCCGUgCAGC- -5'
16206 5' -64.4 NC_004065.1 + 191952 0.68 0.533753
Target:  5'- aGCCucacGGGccuguuGUCCgGCGGCACGUUGg -3'
miRNA:   3'- aCGGc---CCCau----CGGGgCGCCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 177094 0.68 0.524704
Target:  5'- cGCaCGGGGUGGCaCCCuCGGUGucUGUCu -3'
miRNA:   3'- aCG-GCCCCAUCG-GGGcGCCGU--GCAGc -5'
16206 5' -64.4 NC_004065.1 + 167180 0.68 0.524704
Target:  5'- cUGCCGGGGgAGCCuUCGgGGUggGUgGg -3'
miRNA:   3'- -ACGGCCCCaUCGG-GGCgCCGugCAgC- -5'
16206 5' -64.4 NC_004065.1 + 94629 0.68 0.524704
Target:  5'- cUGaCGGGGUcgGGCgCgGcCGGCGCGUCa -3'
miRNA:   3'- -ACgGCCCCA--UCGgGgC-GCCGUGCAGc -5'
16206 5' -64.4 NC_004065.1 + 87160 0.68 0.506788
Target:  5'- aGaCCGGGGUcguccaggAGCCCCugcaccgcGCGGU-CGUCGc -3'
miRNA:   3'- aC-GGCCCCA--------UCGGGG--------CGCCGuGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 69583 0.69 0.497927
Target:  5'- aGCUGGGGUAagCCCGUGGCgACGg-- -3'
miRNA:   3'- aCGGCCCCAUcgGGGCGCCG-UGCagc -5'
16206 5' -64.4 NC_004065.1 + 149704 0.69 0.490013
Target:  5'- cGCCGGGGggccgcggccgcgccGGCCCUcggacucauaGCGGUccagcGCGUCGc -3'
miRNA:   3'- aCGGCCCCa--------------UCGGGG----------CGCCG-----UGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.