Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16206 | 5' | -64.4 | NC_004065.1 | + | 163358 | 0.69 | 0.48042 |
Target: 5'- gGCUGuGGGgGGCCCgGUGGCucuccaucaGCGUCa -3' miRNA: 3'- aCGGC-CCCaUCGGGgCGCCG---------UGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 424 | 0.69 | 0.469203 |
Target: 5'- cGCCcggGGGGUGaacccccuggagccGCCCuCGCGGCguaACGUCc -3' miRNA: 3'- aCGG---CCCCAU--------------CGGG-GCGCCG---UGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 31693 | 0.69 | 0.463218 |
Target: 5'- aGCUgaGGGGgaucUGGCCguuCCGCGGCAUGUgCGa -3' miRNA: 3'- aCGG--CCCC----AUCGG---GGCGCCGUGCA-GC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 202239 | 0.69 | 0.453896 |
Target: 5'- cUGCUGGGGcaggaGGCCCUccagacgGCGGCgcaGCGUCu -3' miRNA: 3'- -ACGGCCCCa----UCGGGG-------CGCCG---UGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 135070 | 0.7 | 0.446345 |
Target: 5'- aGCCGcGGaGcgGGCCCCGCaGCGCcaguaGUCGg -3' miRNA: 3'- aCGGC-CC-Ca-UCGGGGCGcCGUG-----CAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 53868 | 0.7 | 0.42982 |
Target: 5'- cGCCGGGaUGGCCacuCCGuUGGCGCGaCGg -3' miRNA: 3'- aCGGCCCcAUCGG---GGC-GCCGUGCaGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 108430 | 0.7 | 0.41366 |
Target: 5'- -aCCGGGG-GGUCCCG-GGC-CGUCGa -3' miRNA: 3'- acGGCCCCaUCGGGGCgCCGuGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 197788 | 0.7 | 0.41366 |
Target: 5'- cGCCGGuguccgcguuGGUcaccAGCgCCCGCGGCgccACGUUGg -3' miRNA: 3'- aCGGCC----------CCA----UCG-GGGCGCCG---UGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 208012 | 0.7 | 0.397879 |
Target: 5'- gGCCGGGuUAGUgCCgGCGGCGaugacCGUCGg -3' miRNA: 3'- aCGGCCCcAUCGgGG-CGCCGU-----GCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 163431 | 0.7 | 0.397879 |
Target: 5'- cGCCGcGGUGGCCgCCGCcGUGCaGUCGg -3' miRNA: 3'- aCGGCcCCAUCGG-GGCGcCGUG-CAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 23508 | 0.71 | 0.382491 |
Target: 5'- aGCCGGGGUAGCgCCuCGaucgacgaGCGUCGg -3' miRNA: 3'- aCGGCCCCAUCGgGGcGCcg------UGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 26150 | 0.71 | 0.382491 |
Target: 5'- aGCCGGGGUcugcgugccAGCcguccuauucCCCGUgccGGCGCGUCc -3' miRNA: 3'- aCGGCCCCA---------UCG----------GGGCG---CCGUGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 31887 | 0.71 | 0.382491 |
Target: 5'- cUGCUGGuGUacucgagagcgGGCCUgaCGCGGCGCGUCGc -3' miRNA: 3'- -ACGGCCcCA-----------UCGGG--GCGCCGUGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 192539 | 0.71 | 0.374946 |
Target: 5'- cGCCaGGGGUccgcacAGCCCUGCGGgAUGagcuUCGg -3' miRNA: 3'- aCGG-CCCCA------UCGGGGCGCCgUGC----AGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 116123 | 0.71 | 0.367503 |
Target: 5'- cGCCGGaGGUAGCuggucggcguCCUGCGGCGgcUCGg -3' miRNA: 3'- aCGGCC-CCAUCG----------GGGCGCCGUgcAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 62707 | 0.71 | 0.367503 |
Target: 5'- gGUCuuGGGGUAGCuCCUGCGGC--GUCGg -3' miRNA: 3'- aCGG--CCCCAUCG-GGGCGCCGugCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 870 | 0.71 | 0.352924 |
Target: 5'- cUGCCGGGcgagGgcGCCCCGCcGGCAUG-Cu -3' miRNA: 3'- -ACGGCCC----CauCGGGGCG-CCGUGCaGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 136574 | 0.71 | 0.352924 |
Target: 5'- aGCCGGGGagcUGGUCCUGCGGUcCGg-- -3' miRNA: 3'- aCGGCCCC---AUCGGGGCGCCGuGCagc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 152043 | 0.72 | 0.34579 |
Target: 5'- -cCCGGGGcGGCUcgCCGCGGCcaGCGUCu -3' miRNA: 3'- acGGCCCCaUCGG--GGCGCCG--UGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 137808 | 0.72 | 0.331834 |
Target: 5'- gUGUCGGGGaugugGGCCUguuCGCGGCccGCGUCu -3' miRNA: 3'- -ACGGCCCCa----UCGGG---GCGCCG--UGCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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