miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 5' -64.4 NC_004065.1 + 424 0.69 0.469203
Target:  5'- cGCCcggGGGGUGaacccccuggagccGCCCuCGCGGCguaACGUCc -3'
miRNA:   3'- aCGG---CCCCAU--------------CGGG-GCGCCG---UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 870 0.71 0.352924
Target:  5'- cUGCCGGGcgagGgcGCCCCGCcGGCAUG-Cu -3'
miRNA:   3'- -ACGGCCC----CauCGGGGCG-CCGUGCaGc -5'
16206 5' -64.4 NC_004065.1 + 4278 0.73 0.286284
Target:  5'- cUGCUgGGGGUAGCCaCGaCGGCGUGUCGu -3'
miRNA:   3'- -ACGG-CCCCAUCGGgGC-GCCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 6242 0.66 0.645256
Target:  5'- gGCUGGaGGUAGUCCUGUcGUGCGgCGg -3'
miRNA:   3'- aCGGCC-CCAUCGGGGCGcCGUGCaGC- -5'
16206 5' -64.4 NC_004065.1 + 6736 0.77 0.171018
Target:  5'- -aUCGGGGUAGCCgCgGCGGCACucggGUCGg -3'
miRNA:   3'- acGGCCCCAUCGG-GgCGCCGUG----CAGC- -5'
16206 5' -64.4 NC_004065.1 + 23508 0.71 0.382491
Target:  5'- aGCCGGGGUAGCgCCuCGaucgacgaGCGUCGg -3'
miRNA:   3'- aCGGCCCCAUCGgGGcGCcg------UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 26150 0.71 0.382491
Target:  5'- aGCCGGGGUcugcgugccAGCcguccuauucCCCGUgccGGCGCGUCc -3'
miRNA:   3'- aCGGCCCCA---------UCG----------GGGCG---CCGUGCAGc -5'
16206 5' -64.4 NC_004065.1 + 27147 0.66 0.65463
Target:  5'- aGCCGGGuccgAGCaacacacgCCGCGGCAaaacgcccugcCGUCGu -3'
miRNA:   3'- aCGGCCCca--UCGg-------GGCGCCGU-----------GCAGC- -5'
16206 5' -64.4 NC_004065.1 + 27646 0.66 0.663989
Target:  5'- cUGCgCGGGG--GUgCUGCGGCcCGUCa -3'
miRNA:   3'- -ACG-GCCCCauCGgGGCGCCGuGCAGc -5'
16206 5' -64.4 NC_004065.1 + 31460 0.66 0.663054
Target:  5'- gGaCGGcGGUAGCCagggagaCCGCGGCuCGUUa -3'
miRNA:   3'- aCgGCC-CCAUCGG-------GGCGCCGuGCAGc -5'
16206 5' -64.4 NC_004065.1 + 31693 0.69 0.463218
Target:  5'- aGCUgaGGGGgaucUGGCCguuCCGCGGCAUGUgCGa -3'
miRNA:   3'- aCGG--CCCC----AUCGG---GGCGCCGUGCA-GC- -5'
16206 5' -64.4 NC_004065.1 + 31887 0.71 0.382491
Target:  5'- cUGCUGGuGUacucgagagcgGGCCUgaCGCGGCGCGUCGc -3'
miRNA:   3'- -ACGGCCcCA-----------UCGGG--GCGCCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 34450 0.73 0.292478
Target:  5'- gGCCGGGGgacGCgaauCCUGCGGCGCGauggCGg -3'
miRNA:   3'- aCGGCCCCau-CG----GGGCGCCGUGCa---GC- -5'
16206 5' -64.4 NC_004065.1 + 40257 0.66 0.645256
Target:  5'- -cCCGGGGUuucuggggcGCCCCGCcgGGUACGa-- -3'
miRNA:   3'- acGGCCCCAu--------CGGGGCG--CCGUGCagc -5'
16206 5' -64.4 NC_004065.1 + 53868 0.7 0.42982
Target:  5'- cGCCGGGaUGGCCacuCCGuUGGCGCGaCGg -3'
miRNA:   3'- aCGGCCCcAUCGG---GGC-GCCGUGCaGC- -5'
16206 5' -64.4 NC_004065.1 + 56568 0.67 0.598376
Target:  5'- gUGCUGGcGUcgAGCgCCGCcaccGGUACGUCGa -3'
miRNA:   3'- -ACGGCCcCA--UCGgGGCG----CCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 62707 0.71 0.367503
Target:  5'- gGUCuuGGGGUAGCuCCUGCGGC--GUCGg -3'
miRNA:   3'- aCGG--CCCCAUCG-GGGCGCCGugCAGC- -5'
16206 5' -64.4 NC_004065.1 + 65835 0.66 0.645256
Target:  5'- aUGCCGGcGG-AGaUCCGCGcGCACGaCGa -3'
miRNA:   3'- -ACGGCC-CCaUCgGGGCGC-CGUGCaGC- -5'
16206 5' -64.4 NC_004065.1 + 69583 0.69 0.497927
Target:  5'- aGCUGGGGUAagCCCGUGGCgACGg-- -3'
miRNA:   3'- aCGGCCCCAUcgGGGCGCCG-UGCagc -5'
16206 5' -64.4 NC_004065.1 + 74633 0.68 0.55201
Target:  5'- cGCCGccaccgcuacccGGGUcugaGGUCcggaCCGCGGCGCGUCc -3'
miRNA:   3'- aCGGC------------CCCA----UCGG----GGCGCCGUGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.