miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 5' -64.4 NC_004065.1 + 86906 0.67 0.57973
Target:  5'- cGCCGGucUcGCCCUcgGCGGCgcgcGCGUCGa -3'
miRNA:   3'- aCGGCCccAuCGGGG--CGCCG----UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 87160 0.68 0.506788
Target:  5'- aGaCCGGGGUcguccaggAGCCCCugcaccgcGCGGU-CGUCGc -3'
miRNA:   3'- aC-GGCCCCA--------UCGGGG--------CGCCGuGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 90127 0.77 0.167092
Target:  5'- cGCCGGccGGaGGCCCCGCGGCcaccuCGUCc -3'
miRNA:   3'- aCGGCC--CCaUCGGGGCGCCGu----GCAGc -5'
16206 5' -64.4 NC_004065.1 + 91834 0.67 0.598376
Target:  5'- aGCgGGGGUcguucuGGUcgCCCGCGGCACc--- -3'
miRNA:   3'- aCGgCCCCA------UCG--GGGCGCCGUGcagc -5'
16206 5' -64.4 NC_004065.1 + 94629 0.68 0.524704
Target:  5'- cUGaCGGGGUcgGGCgCgGcCGGCGCGUCa -3'
miRNA:   3'- -ACgGCCCCA--UCGgGgC-GCCGUGCAGc -5'
16206 5' -64.4 NC_004065.1 + 94956 0.67 0.57973
Target:  5'- cGCUGcGGGgcccGCUCCGCGGCugccGCGUaCGc -3'
miRNA:   3'- aCGGC-CCCau--CGGGGCGCCG----UGCA-GC- -5'
16206 5' -64.4 NC_004065.1 + 99969 0.66 0.635873
Target:  5'- cGCCGcGGcGU-GCUcgggCCGCGGguCGUCGu -3'
miRNA:   3'- aCGGC-CC-CAuCGG----GGCGCCguGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 102560 0.84 0.051027
Target:  5'- cGCCGGGGUcgGGUCCCGCGGCcaucaGCGUCc -3'
miRNA:   3'- aCGGCCCCA--UCGGGGCGCCG-----UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 106123 0.68 0.549259
Target:  5'- gGCCuGGGGUAcggggcgacgacguGCacggcgcaCCUGCGGCGCGUgCGg -3'
miRNA:   3'- aCGG-CCCCAU--------------CG--------GGGCGCCGUGCA-GC- -5'
16206 5' -64.4 NC_004065.1 + 108430 0.7 0.41366
Target:  5'- -aCCGGGG-GGUCCCG-GGC-CGUCGa -3'
miRNA:   3'- acGGCCCCaUCGGGGCgCCGuGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 109865 0.73 0.292478
Target:  5'- gUGCCGGGcggugccaccGgcGUCgCCGCGGCcGCGUCGg -3'
miRNA:   3'- -ACGGCCC----------CauCGG-GGCGCCG-UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 112851 0.74 0.245808
Target:  5'- cUGCCccaGGGGcGGaCCCCGuCGGCGCuGUCGg -3'
miRNA:   3'- -ACGG---CCCCaUC-GGGGC-GCCGUG-CAGC- -5'
16206 5' -64.4 NC_004065.1 + 114010 0.66 0.663989
Target:  5'- cGUCGGcagAGagcugcCCCCGCGGCgcACGUCGg -3'
miRNA:   3'- aCGGCCccaUC------GGGGCGCCG--UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 114801 0.67 0.607733
Target:  5'- -cCCGGcGGUaagcAGCCCgGCGGUAugcccCGUCGc -3'
miRNA:   3'- acGGCC-CCA----UCGGGgCGCCGU-----GCAGC- -5'
16206 5' -64.4 NC_004065.1 + 116123 0.71 0.367503
Target:  5'- cGCCGGaGGUAGCuggucggcguCCUGCGGCGgcUCGg -3'
miRNA:   3'- aCGGCC-CCAUCG----------GGGCGCCGUgcAGC- -5'
16206 5' -64.4 NC_004065.1 + 117172 0.66 0.663989
Target:  5'- cGCCgacGGGGUccGCCCCuGgGGCagGCGUUGc -3'
miRNA:   3'- aCGG---CCCCAu-CGGGG-CgCCG--UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 119809 0.67 0.602117
Target:  5'- cGCCGGcGaAGCCCUcuucccucucgacggGCGGCggcGCGUCGc -3'
miRNA:   3'- aCGGCCcCaUCGGGG---------------CGCCG---UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 135070 0.7 0.446345
Target:  5'- aGCCGcGGaGcgGGCCCCGCaGCGCcaguaGUCGg -3'
miRNA:   3'- aCGGC-CC-Ca-UCGGGGCGcCGUG-----CAGC- -5'
16206 5' -64.4 NC_004065.1 + 136408 0.65 0.678916
Target:  5'- aGCCGGGGagcugguccugggGGCCCgGUGaGCcgAgGUCGg -3'
miRNA:   3'- aCGGCCCCa------------UCGGGgCGC-CG--UgCAGC- -5'
16206 5' -64.4 NC_004065.1 + 136574 0.71 0.352924
Target:  5'- aGCCGGGGagcUGGUCCUGCGGUcCGg-- -3'
miRNA:   3'- aCGGCCCC---AUCGGGGCGCCGuGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.