Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16206 | 5' | -64.4 | NC_004065.1 | + | 197788 | 0.7 | 0.41366 |
Target: 5'- cGCCGGuguccgcguuGGUcaccAGCgCCCGCGGCgccACGUUGg -3' miRNA: 3'- aCGGCC----------CCA----UCG-GGGCGCCG---UGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 198358 | 0.67 | 0.585313 |
Target: 5'- cGCCGGGGUccuucgccaggaacAGCgCCGacgucccguagccCGGCGuCGUCa -3' miRNA: 3'- aCGGCCCCA--------------UCGgGGC-------------GCCGU-GCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 198501 | 1.07 | 0.00123 |
Target: 5'- aUGCCGGGGUAGCCCCGCGGCACGUCGc -3' miRNA: 3'- -ACGGCCCCAUCGGGGCGCCGUGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 201381 | 0.68 | 0.537388 |
Target: 5'- cGCCGGGGgguGCCacguCgacgcacagaugcguCGCGGCGgGUCGg -3' miRNA: 3'- aCGGCCCCau-CGG----G---------------GCGCCGUgCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 201530 | 0.68 | 0.56121 |
Target: 5'- aUGCgacGG-AGCUCCGCGGCGCuGUCGg -3' miRNA: 3'- -ACGgccCCaUCGGGGCGCCGUG-CAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 201817 | 0.66 | 0.626487 |
Target: 5'- uUGCCGGGcGUccgcAGCUCgaucaccgaguUGCGGUACGUgGa -3' miRNA: 3'- -ACGGCCC-CA----UCGGG-----------GCGCCGUGCAgC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 202239 | 0.69 | 0.453896 |
Target: 5'- cUGCUGGGGcaggaGGCCCUccagacgGCGGCgcaGCGUCu -3' miRNA: 3'- -ACGGCCCCa----UCGGGG-------CGCCG---UGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 208012 | 0.7 | 0.397879 |
Target: 5'- gGCCGGGuUAGUgCCgGCGGCGaugacCGUCGg -3' miRNA: 3'- aCGGCCCcAUCGgGG-CGCCGU-----GCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 210843 | 0.65 | 0.681707 |
Target: 5'- gGCCGGaGGU-GUCCCGCcucggcagaaagcGGCAucggcagcauCGUCGu -3' miRNA: 3'- aCGGCC-CCAuCGGGGCG-------------CCGU----------GCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 229153 | 0.66 | 0.626487 |
Target: 5'- aUGCCGgcGGGgcGCCCuCGCccGGCA-GUCa -3' miRNA: 3'- -ACGGC--CCCauCGGG-GCG--CCGUgCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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