miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 5' -64.4 NC_004065.1 + 229153 0.66 0.626487
Target:  5'- aUGCCGgcGGGgcGCCCuCGCccGGCA-GUCa -3'
miRNA:   3'- -ACGGC--CCCauCGGG-GCG--CCGUgCAGc -5'
16206 5' -64.4 NC_004065.1 + 210843 0.65 0.681707
Target:  5'- gGCCGGaGGU-GUCCCGCcucggcagaaagcGGCAucggcagcauCGUCGu -3'
miRNA:   3'- aCGGCC-CCAuCGGGGCG-------------CCGU----------GCAGC- -5'
16206 5' -64.4 NC_004065.1 + 208012 0.7 0.397879
Target:  5'- gGCCGGGuUAGUgCCgGCGGCGaugacCGUCGg -3'
miRNA:   3'- aCGGCCCcAUCGgGG-CGCCGU-----GCAGC- -5'
16206 5' -64.4 NC_004065.1 + 202239 0.69 0.453896
Target:  5'- cUGCUGGGGcaggaGGCCCUccagacgGCGGCgcaGCGUCu -3'
miRNA:   3'- -ACGGCCCCa----UCGGGG-------CGCCG---UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 201817 0.66 0.626487
Target:  5'- uUGCCGGGcGUccgcAGCUCgaucaccgaguUGCGGUACGUgGa -3'
miRNA:   3'- -ACGGCCC-CA----UCGGG-----------GCGCCGUGCAgC- -5'
16206 5' -64.4 NC_004065.1 + 201530 0.68 0.56121
Target:  5'- aUGCgacGG-AGCUCCGCGGCGCuGUCGg -3'
miRNA:   3'- -ACGgccCCaUCGGGGCGCCGUG-CAGC- -5'
16206 5' -64.4 NC_004065.1 + 201381 0.68 0.537388
Target:  5'- cGCCGGGGgguGCCacguCgacgcacagaugcguCGCGGCGgGUCGg -3'
miRNA:   3'- aCGGCCCCau-CGG----G---------------GCGCCGUgCAGC- -5'
16206 5' -64.4 NC_004065.1 + 198501 1.07 0.00123
Target:  5'- aUGCCGGGGUAGCCCCGCGGCACGUCGc -3'
miRNA:   3'- -ACGGCCCCAUCGGGGCGCCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 198358 0.67 0.585313
Target:  5'- cGCCGGGGUccuucgccaggaacAGCgCCGacgucccguagccCGGCGuCGUCa -3'
miRNA:   3'- aCGGCCCCA--------------UCGgGGC-------------GCCGU-GCAGc -5'
16206 5' -64.4 NC_004065.1 + 197788 0.7 0.41366
Target:  5'- cGCCGGuguccgcguuGGUcaccAGCgCCCGCGGCgccACGUUGg -3'
miRNA:   3'- aCGGCC----------CCA----UCG-GGGCGCCG---UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 196630 0.66 0.677054
Target:  5'- cGCCGGGGcgagcgccucgagaGGCUCCGCGcGCAgaaGaUCGg -3'
miRNA:   3'- aCGGCCCCa-------------UCGGGGCGC-CGUg--C-AGC- -5'
16206 5' -64.4 NC_004065.1 + 192539 0.71 0.374946
Target:  5'- cGCCaGGGGUccgcacAGCCCUGCGGgAUGagcuUCGg -3'
miRNA:   3'- aCGG-CCCCA------UCGGGGCGCCgUGC----AGC- -5'
16206 5' -64.4 NC_004065.1 + 191952 0.68 0.533753
Target:  5'- aGCCucacGGGccuguuGUCCgGCGGCACGUUGg -3'
miRNA:   3'- aCGGc---CCCau----CGGGgCGCCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 186881 0.66 0.673327
Target:  5'- cGCCGGGGgGGCCaucuaCG-GGCACa--- -3'
miRNA:   3'- aCGGCCCCaUCGGg----GCgCCGUGcagc -5'
16206 5' -64.4 NC_004065.1 + 181987 0.67 0.607733
Target:  5'- cGUgGGGGaugAGgaCCCGCaGUACGUCGu -3'
miRNA:   3'- aCGgCCCCa--UCg-GGGCGcCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 177094 0.68 0.524704
Target:  5'- cGCaCGGGGUGGCaCCCuCGGUGucUGUCu -3'
miRNA:   3'- aCG-GCCCCAUCG-GGGcGCCGU--GCAGc -5'
16206 5' -64.4 NC_004065.1 + 168635 0.73 0.268325
Target:  5'- gUGCCGcGGGcggAGCCggCGCGGCgACGUCGu -3'
miRNA:   3'- -ACGGC-CCCa--UCGGg-GCGCCG-UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 167180 0.68 0.524704
Target:  5'- cUGCCGGGGgAGCCuUCGgGGUggGUgGg -3'
miRNA:   3'- -ACGGCCCCaUCGG-GGCgCCGugCAgC- -5'
16206 5' -64.4 NC_004065.1 + 166158 0.66 0.65463
Target:  5'- gUGCgGGuGGUGGUCCuucgcgaaCGCGGCcauggcgaACGUCa -3'
miRNA:   3'- -ACGgCC-CCAUCGGG--------GCGCCG--------UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 163431 0.7 0.397879
Target:  5'- cGCCGcGGUGGCCgCCGCcGUGCaGUCGg -3'
miRNA:   3'- aCGGCcCCAUCGG-GGCGcCGUG-CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.