Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16206 | 5' | -64.4 | NC_004065.1 | + | 163358 | 0.69 | 0.48042 |
Target: 5'- gGCUGuGGGgGGCCCgGUGGCucuccaucaGCGUCa -3' miRNA: 3'- aCGGC-CCCaUCGGGgCGCCG---------UGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 163295 | 0.66 | 0.626487 |
Target: 5'- cGCCGGGGU----CCGaCGGCACGggCGc -3' miRNA: 3'- aCGGCCCCAucggGGC-GCCGUGCa-GC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 157111 | 0.68 | 0.542856 |
Target: 5'- cGCCGGGGgcGCCUucaGCGGgggcaucauCGCGUUc -3' miRNA: 3'- aCGGCCCCauCGGGg--CGCC---------GUGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 152918 | 0.68 | 0.56121 |
Target: 5'- aUGUCGGcGGcgcuGCCgCCGCGGCAaaUCGa -3' miRNA: 3'- -ACGGCC-CCau--CGG-GGCGCCGUgcAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 152043 | 0.72 | 0.34579 |
Target: 5'- -cCCGGGGcGGCUcgCCGCGGCcaGCGUCu -3' miRNA: 3'- acGGCCCCaUCGG--GGCGCCG--UGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 150718 | 0.67 | 0.58904 |
Target: 5'- cGCCGGuGGgaGGCCCa--GGC-CGUCGa -3' miRNA: 3'- aCGGCC-CCa-UCGGGgcgCCGuGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 149704 | 0.69 | 0.490013 |
Target: 5'- cGCCGGGGggccgcggccgcgccGGCCCUcggacucauaGCGGUccagcGCGUCGc -3' miRNA: 3'- aCGGCCCCa--------------UCGGGG----------CGCCG-----UGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 146594 | 0.74 | 0.256865 |
Target: 5'- -aUCGGGGUGGCCaUCGgGGC-CGUCGg -3' miRNA: 3'- acGGCCCCAUCGG-GGCgCCGuGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 139646 | 0.67 | 0.58904 |
Target: 5'- cGCCGGcuccaAGCUgUGCGGCGCGUgCGg -3' miRNA: 3'- aCGGCCcca--UCGGgGCGCCGUGCA-GC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 137808 | 0.72 | 0.331834 |
Target: 5'- gUGUCGGGGaugugGGCCUguuCGCGGCccGCGUCu -3' miRNA: 3'- -ACGGCCCCa----UCGGG---GCGCCG--UGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 136574 | 0.71 | 0.352924 |
Target: 5'- aGCCGGGGagcUGGUCCUGCGGUcCGg-- -3' miRNA: 3'- aCGGCCCC---AUCGGGGCGCCGuGCagc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 136408 | 0.65 | 0.678916 |
Target: 5'- aGCCGGGGagcugguccugggGGCCCgGUGaGCcgAgGUCGg -3' miRNA: 3'- aCGGCCCCa------------UCGGGgCGC-CG--UgCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 135070 | 0.7 | 0.446345 |
Target: 5'- aGCCGcGGaGcgGGCCCCGCaGCGCcaguaGUCGg -3' miRNA: 3'- aCGGC-CC-Ca-UCGGGGCGcCGUG-----CAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 119809 | 0.67 | 0.602117 |
Target: 5'- cGCCGGcGaAGCCCUcuucccucucgacggGCGGCggcGCGUCGc -3' miRNA: 3'- aCGGCCcCaUCGGGG---------------CGCCG---UGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 117172 | 0.66 | 0.663989 |
Target: 5'- cGCCgacGGGGUccGCCCCuGgGGCagGCGUUGc -3' miRNA: 3'- aCGG---CCCCAu-CGGGG-CgCCG--UGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 116123 | 0.71 | 0.367503 |
Target: 5'- cGCCGGaGGUAGCuggucggcguCCUGCGGCGgcUCGg -3' miRNA: 3'- aCGGCC-CCAUCG----------GGGCGCCGUgcAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 114801 | 0.67 | 0.607733 |
Target: 5'- -cCCGGcGGUaagcAGCCCgGCGGUAugcccCGUCGc -3' miRNA: 3'- acGGCC-CCA----UCGGGgCGCCGU-----GCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 114010 | 0.66 | 0.663989 |
Target: 5'- cGUCGGcagAGagcugcCCCCGCGGCgcACGUCGg -3' miRNA: 3'- aCGGCCccaUC------GGGGCGCCG--UGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 112851 | 0.74 | 0.245808 |
Target: 5'- cUGCCccaGGGGcGGaCCCCGuCGGCGCuGUCGg -3' miRNA: 3'- -ACGG---CCCCaUC-GGGGC-GCCGUG-CAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 109865 | 0.73 | 0.292478 |
Target: 5'- gUGCCGGGcggugccaccGgcGUCgCCGCGGCcGCGUCGg -3' miRNA: 3'- -ACGGCCC----------CauCGG-GGCGCCG-UGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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