Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16206 | 5' | -64.4 | NC_004065.1 | + | 108430 | 0.7 | 0.41366 |
Target: 5'- -aCCGGGG-GGUCCCG-GGC-CGUCGa -3' miRNA: 3'- acGGCCCCaUCGGGGCgCCGuGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 106123 | 0.68 | 0.549259 |
Target: 5'- gGCCuGGGGUAcggggcgacgacguGCacggcgcaCCUGCGGCGCGUgCGg -3' miRNA: 3'- aCGG-CCCCAU--------------CG--------GGGCGCCGUGCA-GC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 102560 | 0.84 | 0.051027 |
Target: 5'- cGCCGGGGUcgGGUCCCGCGGCcaucaGCGUCc -3' miRNA: 3'- aCGGCCCCA--UCGGGGCGCCG-----UGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 99969 | 0.66 | 0.635873 |
Target: 5'- cGCCGcGGcGU-GCUcgggCCGCGGguCGUCGu -3' miRNA: 3'- aCGGC-CC-CAuCGG----GGCGCCguGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 94956 | 0.67 | 0.57973 |
Target: 5'- cGCUGcGGGgcccGCUCCGCGGCugccGCGUaCGc -3' miRNA: 3'- aCGGC-CCCau--CGGGGCGCCG----UGCA-GC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 94629 | 0.68 | 0.524704 |
Target: 5'- cUGaCGGGGUcgGGCgCgGcCGGCGCGUCa -3' miRNA: 3'- -ACgGCCCCA--UCGgGgC-GCCGUGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 91834 | 0.67 | 0.598376 |
Target: 5'- aGCgGGGGUcguucuGGUcgCCCGCGGCACc--- -3' miRNA: 3'- aCGgCCCCA------UCG--GGGCGCCGUGcagc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 90127 | 0.77 | 0.167092 |
Target: 5'- cGCCGGccGGaGGCCCCGCGGCcaccuCGUCc -3' miRNA: 3'- aCGGCC--CCaUCGGGGCGCCGu----GCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 87160 | 0.68 | 0.506788 |
Target: 5'- aGaCCGGGGUcguccaggAGCCCCugcaccgcGCGGU-CGUCGc -3' miRNA: 3'- aC-GGCCCCA--------UCGGGG--------CGCCGuGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 86906 | 0.67 | 0.57973 |
Target: 5'- cGCCGGucUcGCCCUcgGCGGCgcgcGCGUCGa -3' miRNA: 3'- aCGGCCccAuCGGGG--CGCCG----UGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 74633 | 0.68 | 0.55201 |
Target: 5'- cGCCGccaccgcuacccGGGUcugaGGUCcggaCCGCGGCGCGUCc -3' miRNA: 3'- aCGGC------------CCCA----UCGG----GGCGCCGUGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 69583 | 0.69 | 0.497927 |
Target: 5'- aGCUGGGGUAagCCCGUGGCgACGg-- -3' miRNA: 3'- aCGGCCCCAUcgGGGCGCCG-UGCagc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 65835 | 0.66 | 0.645256 |
Target: 5'- aUGCCGGcGG-AGaUCCGCGcGCACGaCGa -3' miRNA: 3'- -ACGGCC-CCaUCgGGGCGC-CGUGCaGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 62707 | 0.71 | 0.367503 |
Target: 5'- gGUCuuGGGGUAGCuCCUGCGGC--GUCGg -3' miRNA: 3'- aCGG--CCCCAUCG-GGGCGCCGugCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 56568 | 0.67 | 0.598376 |
Target: 5'- gUGCUGGcGUcgAGCgCCGCcaccGGUACGUCGa -3' miRNA: 3'- -ACGGCCcCA--UCGgGGCG----CCGUGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 53868 | 0.7 | 0.42982 |
Target: 5'- cGCCGGGaUGGCCacuCCGuUGGCGCGaCGg -3' miRNA: 3'- aCGGCCCcAUCGG---GGC-GCCGUGCaGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 40257 | 0.66 | 0.645256 |
Target: 5'- -cCCGGGGUuucuggggcGCCCCGCcgGGUACGa-- -3' miRNA: 3'- acGGCCCCAu--------CGGGGCG--CCGUGCagc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 34450 | 0.73 | 0.292478 |
Target: 5'- gGCCGGGGgacGCgaauCCUGCGGCGCGauggCGg -3' miRNA: 3'- aCGGCCCCau-CG----GGGCGCCGUGCa---GC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 31887 | 0.71 | 0.382491 |
Target: 5'- cUGCUGGuGUacucgagagcgGGCCUgaCGCGGCGCGUCGc -3' miRNA: 3'- -ACGGCCcCA-----------UCGGG--GCGCCGUGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 31693 | 0.69 | 0.463218 |
Target: 5'- aGCUgaGGGGgaucUGGCCguuCCGCGGCAUGUgCGa -3' miRNA: 3'- aCGG--CCCC----AUCGG---GGCGCCGUGCA-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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