miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 5' -64.4 NC_004065.1 + 198358 0.67 0.585313
Target:  5'- cGCCGGGGUccuucgccaggaacAGCgCCGacgucccguagccCGGCGuCGUCa -3'
miRNA:   3'- aCGGCCCCA--------------UCGgGGC-------------GCCGU-GCAGc -5'
16206 5' -64.4 NC_004065.1 + 135070 0.7 0.446345
Target:  5'- aGCCGcGGaGcgGGCCCCGCaGCGCcaguaGUCGg -3'
miRNA:   3'- aCGGC-CC-Ca-UCGGGGCGcCGUG-----CAGC- -5'
16206 5' -64.4 NC_004065.1 + 149704 0.69 0.490013
Target:  5'- cGCCGGGGggccgcggccgcgccGGCCCUcggacucauaGCGGUccagcGCGUCGc -3'
miRNA:   3'- aCGGCCCCa--------------UCGGGG----------CGCCG-----UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 69583 0.69 0.497927
Target:  5'- aGCUGGGGUAagCCCGUGGCgACGg-- -3'
miRNA:   3'- aCGGCCCCAUcgGGGCGCCG-UGCagc -5'
16206 5' -64.4 NC_004065.1 + 177094 0.68 0.524704
Target:  5'- cGCaCGGGGUGGCaCCCuCGGUGucUGUCu -3'
miRNA:   3'- aCG-GCCCCAUCG-GGGcGCCGU--GCAGc -5'
16206 5' -64.4 NC_004065.1 + 201381 0.68 0.537388
Target:  5'- cGCCGGGGgguGCCacguCgacgcacagaugcguCGCGGCGgGUCGg -3'
miRNA:   3'- aCGGCCCCau-CGG----G---------------GCGCCGUgCAGC- -5'
16206 5' -64.4 NC_004065.1 + 74633 0.68 0.55201
Target:  5'- cGCCGccaccgcuacccGGGUcugaGGUCcggaCCGCGGCGCGUCc -3'
miRNA:   3'- aCGGC------------CCCA----UCGG----GGCGCCGUGCAGc -5'
16206 5' -64.4 NC_004065.1 + 152918 0.68 0.56121
Target:  5'- aUGUCGGcGGcgcuGCCgCCGCGGCAaaUCGa -3'
miRNA:   3'- -ACGGCC-CCau--CGG-GGCGCCGUgcAGC- -5'
16206 5' -64.4 NC_004065.1 + 201530 0.68 0.56121
Target:  5'- aUGCgacGG-AGCUCCGCGGCGCuGUCGg -3'
miRNA:   3'- -ACGgccCCaUCGGGGCGCCGUG-CAGC- -5'
16206 5' -64.4 NC_004065.1 + 53868 0.7 0.42982
Target:  5'- cGCCGGGaUGGCCacuCCGuUGGCGCGaCGg -3'
miRNA:   3'- aCGGCCCcAUCGG---GGC-GCCGUGCaGC- -5'
16206 5' -64.4 NC_004065.1 + 197788 0.7 0.41366
Target:  5'- cGCCGGuguccgcguuGGUcaccAGCgCCCGCGGCgccACGUUGg -3'
miRNA:   3'- aCGGCC----------CCA----UCG-GGGCGCCG---UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 108430 0.7 0.41366
Target:  5'- -aCCGGGG-GGUCCCG-GGC-CGUCGa -3'
miRNA:   3'- acGGCCCCaUCGGGGCgCCGuGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 90127 0.77 0.167092
Target:  5'- cGCCGGccGGaGGCCCCGCGGCcaccuCGUCc -3'
miRNA:   3'- aCGGCC--CCaUCGGGGCGCCGu----GCAGc -5'
16206 5' -64.4 NC_004065.1 + 168635 0.73 0.268325
Target:  5'- gUGCCGcGGGcggAGCCggCGCGGCgACGUCGu -3'
miRNA:   3'- -ACGGC-CCCa--UCGGg-GCGCCG-UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 109865 0.73 0.292478
Target:  5'- gUGCCGGGcggugccaccGgcGUCgCCGCGGCcGCGUCGg -3'
miRNA:   3'- -ACGGCCC----------CauCGG-GGCGCCG-UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 62707 0.71 0.367503
Target:  5'- gGUCuuGGGGUAGCuCCUGCGGC--GUCGg -3'
miRNA:   3'- aCGG--CCCCAUCG-GGGCGCCGugCAGC- -5'
16206 5' -64.4 NC_004065.1 + 116123 0.71 0.367503
Target:  5'- cGCCGGaGGUAGCuggucggcguCCUGCGGCGgcUCGg -3'
miRNA:   3'- aCGGCC-CCAUCG----------GGGCGCCGUgcAGC- -5'
16206 5' -64.4 NC_004065.1 + 23508 0.71 0.382491
Target:  5'- aGCCGGGGUAGCgCCuCGaucgacgaGCGUCGg -3'
miRNA:   3'- aCGGCCCCAUCGgGGcGCcg------UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 26150 0.71 0.382491
Target:  5'- aGCCGGGGUcugcgugccAGCcguccuauucCCCGUgccGGCGCGUCc -3'
miRNA:   3'- aCGGCCCCA---------UCG----------GGGCG---CCGUGCAGc -5'
16206 5' -64.4 NC_004065.1 + 163431 0.7 0.397879
Target:  5'- cGCCGcGGUGGCCgCCGCcGUGCaGUCGg -3'
miRNA:   3'- aCGGCcCCAUCGG-GGCGcCGUG-CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.