miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 5' -64.4 NC_004065.1 + 168635 0.73 0.268325
Target:  5'- gUGCCGcGGGcggAGCCggCGCGGCgACGUCGu -3'
miRNA:   3'- -ACGGC-CCCa--UCGGg-GCGCCG-UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 109865 0.73 0.292478
Target:  5'- gUGCCGGGcggugccaccGgcGUCgCCGCGGCcGCGUCGg -3'
miRNA:   3'- -ACGGCCC----------CauCGG-GGCGCCG-UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 62707 0.71 0.367503
Target:  5'- gGUCuuGGGGUAGCuCCUGCGGC--GUCGg -3'
miRNA:   3'- aCGG--CCCCAUCG-GGGCGCCGugCAGC- -5'
16206 5' -64.4 NC_004065.1 + 116123 0.71 0.367503
Target:  5'- cGCCGGaGGUAGCuggucggcguCCUGCGGCGgcUCGg -3'
miRNA:   3'- aCGGCC-CCAUCG----------GGGCGCCGUgcAGC- -5'
16206 5' -64.4 NC_004065.1 + 23508 0.71 0.382491
Target:  5'- aGCCGGGGUAGCgCCuCGaucgacgaGCGUCGg -3'
miRNA:   3'- aCGGCCCCAUCGgGGcGCcg------UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 26150 0.71 0.382491
Target:  5'- aGCCGGGGUcugcgugccAGCcguccuauucCCCGUgccGGCGCGUCc -3'
miRNA:   3'- aCGGCCCCA---------UCG----------GGGCG---CCGUGCAGc -5'
16206 5' -64.4 NC_004065.1 + 163431 0.7 0.397879
Target:  5'- cGCCGcGGUGGCCgCCGCcGUGCaGUCGg -3'
miRNA:   3'- aCGGCcCCAUCGG-GGCGcCGUG-CAGC- -5'
16206 5' -64.4 NC_004065.1 + 69583 0.69 0.497927
Target:  5'- aGCUGGGGUAagCCCGUGGCgACGg-- -3'
miRNA:   3'- aCGGCCCCAUcgGGGCGCCG-UGCagc -5'
16206 5' -64.4 NC_004065.1 + 149704 0.69 0.490013
Target:  5'- cGCCGGGGggccgcggccgcgccGGCCCUcggacucauaGCGGUccagcGCGUCGc -3'
miRNA:   3'- aCGGCCCCa--------------UCGGGG----------CGCCG-----UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 135070 0.7 0.446345
Target:  5'- aGCCGcGGaGcgGGCCCCGCaGCGCcaguaGUCGg -3'
miRNA:   3'- aCGGC-CC-Ca-UCGGGGCGcCGUG-----CAGC- -5'
16206 5' -64.4 NC_004065.1 + 53868 0.7 0.42982
Target:  5'- cGCCGGGaUGGCCacuCCGuUGGCGCGaCGg -3'
miRNA:   3'- aCGGCCCcAUCGG---GGC-GCCGUGCaGC- -5'
16206 5' -64.4 NC_004065.1 + 197788 0.7 0.41366
Target:  5'- cGCCGGuguccgcguuGGUcaccAGCgCCCGCGGCgccACGUUGg -3'
miRNA:   3'- aCGGCC----------CCA----UCG-GGGCGCCG---UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 108430 0.7 0.41366
Target:  5'- -aCCGGGG-GGUCCCG-GGC-CGUCGa -3'
miRNA:   3'- acGGCCCCaUCGGGGCgCCGuGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 137808 0.72 0.331834
Target:  5'- gUGUCGGGGaugugGGCCUguuCGCGGCccGCGUCu -3'
miRNA:   3'- -ACGGCCCCa----UCGGG---GCGCCG--UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 34450 0.73 0.292478
Target:  5'- gGCCGGGGgacGCgaauCCUGCGGCGCGauggCGg -3'
miRNA:   3'- aCGGCCCCau-CG----GGGCGCCGUGCa---GC- -5'
16206 5' -64.4 NC_004065.1 + 4278 0.73 0.286284
Target:  5'- cUGCUgGGGGUAGCCaCGaCGGCGUGUCGu -3'
miRNA:   3'- -ACGG-CCCCAUCGGgGC-GCCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 146594 0.74 0.256865
Target:  5'- -aUCGGGGUGGCCaUCGgGGC-CGUCGg -3'
miRNA:   3'- acGGCCCCAUCGG-GGCgCCGuGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 112851 0.74 0.245808
Target:  5'- cUGCCccaGGGGcGGaCCCCGuCGGCGCuGUCGg -3'
miRNA:   3'- -ACGG---CCCCaUC-GGGGC-GCCGUG-CAGC- -5'
16206 5' -64.4 NC_004065.1 + 6736 0.77 0.171018
Target:  5'- -aUCGGGGUAGCCgCgGCGGCACucggGUCGg -3'
miRNA:   3'- acGGCCCCAUCGG-GgCGCCGUG----CAGC- -5'
16206 5' -64.4 NC_004065.1 + 210843 0.65 0.681707
Target:  5'- gGCCGGaGGU-GUCCCGCcucggcagaaagcGGCAucggcagcauCGUCGu -3'
miRNA:   3'- aCGGCC-CCAuCGGGGCG-------------CCGU----------GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.