miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 5' -64.4 NC_004065.1 + 106123 0.68 0.549259
Target:  5'- gGCCuGGGGUAcggggcgacgacguGCacggcgcaCCUGCGGCGCGUgCGg -3'
miRNA:   3'- aCGG-CCCCAU--------------CG--------GGGCGCCGUGCA-GC- -5'
16206 5' -64.4 NC_004065.1 + 94956 0.67 0.57973
Target:  5'- cGCUGcGGGgcccGCUCCGCGGCugccGCGUaCGc -3'
miRNA:   3'- aCGGC-CCCau--CGGGGCGCCG----UGCA-GC- -5'
16206 5' -64.4 NC_004065.1 + 86906 0.67 0.57973
Target:  5'- cGCCGGucUcGCCCUcgGCGGCgcgcGCGUCGa -3'
miRNA:   3'- aCGGCCccAuCGGGG--CGCCG----UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 139646 0.67 0.58904
Target:  5'- cGCCGGcuccaAGCUgUGCGGCGCGUgCGg -3'
miRNA:   3'- aCGGCCcca--UCGGgGCGCCGUGCA-GC- -5'
16206 5' -64.4 NC_004065.1 + 56568 0.67 0.598376
Target:  5'- gUGCUGGcGUcgAGCgCCGCcaccGGUACGUCGa -3'
miRNA:   3'- -ACGGCCcCA--UCGgGGCG----CCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 119809 0.67 0.602117
Target:  5'- cGCCGGcGaAGCCCUcuucccucucgacggGCGGCggcGCGUCGc -3'
miRNA:   3'- aCGGCCcCaUCGGGG---------------CGCCG---UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 31693 0.69 0.463218
Target:  5'- aGCUgaGGGGgaucUGGCCguuCCGCGGCAUGUgCGa -3'
miRNA:   3'- aCGG--CCCC----AUCGG---GGCGCCGUGCA-GC- -5'
16206 5' -64.4 NC_004065.1 + 202239 0.69 0.453896
Target:  5'- cUGCUGGGGcaggaGGCCCUccagacgGCGGCgcaGCGUCu -3'
miRNA:   3'- -ACGGCCCCa----UCGGGG-------CGCCG---UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 6736 0.77 0.171018
Target:  5'- -aUCGGGGUAGCCgCgGCGGCACucggGUCGg -3'
miRNA:   3'- acGGCCCCAUCGG-GgCGCCGUG----CAGC- -5'
16206 5' -64.4 NC_004065.1 + 112851 0.74 0.245808
Target:  5'- cUGCCccaGGGGcGGaCCCCGuCGGCGCuGUCGg -3'
miRNA:   3'- -ACGG---CCCCaUC-GGGGC-GCCGUG-CAGC- -5'
16206 5' -64.4 NC_004065.1 + 146594 0.74 0.256865
Target:  5'- -aUCGGGGUGGCCaUCGgGGC-CGUCGg -3'
miRNA:   3'- acGGCCCCAUCGG-GGCgCCGuGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 4278 0.73 0.286284
Target:  5'- cUGCUgGGGGUAGCCaCGaCGGCGUGUCGu -3'
miRNA:   3'- -ACGG-CCCCAUCGGgGC-GCCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 34450 0.73 0.292478
Target:  5'- gGCCGGGGgacGCgaauCCUGCGGCGCGauggCGg -3'
miRNA:   3'- aCGGCCCCau-CG----GGGCGCCGUGCa---GC- -5'
16206 5' -64.4 NC_004065.1 + 137808 0.72 0.331834
Target:  5'- gUGUCGGGGaugugGGCCUguuCGCGGCccGCGUCu -3'
miRNA:   3'- -ACGGCCCCa----UCGGG---GCGCCG--UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 152043 0.72 0.34579
Target:  5'- -cCCGGGGcGGCUcgCCGCGGCcaGCGUCu -3'
miRNA:   3'- acGGCCCCaUCGG--GGCGCCG--UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 870 0.71 0.352924
Target:  5'- cUGCCGGGcgagGgcGCCCCGCcGGCAUG-Cu -3'
miRNA:   3'- -ACGGCCC----CauCGGGGCG-CCGUGCaGc -5'
16206 5' -64.4 NC_004065.1 + 136574 0.71 0.352924
Target:  5'- aGCCGGGGagcUGGUCCUGCGGUcCGg-- -3'
miRNA:   3'- aCGGCCCC---AUCGGGGCGCCGuGCagc -5'
16206 5' -64.4 NC_004065.1 + 192539 0.71 0.374946
Target:  5'- cGCCaGGGGUccgcacAGCCCUGCGGgAUGagcuUCGg -3'
miRNA:   3'- aCGG-CCCCA------UCGGGGCGCCgUGC----AGC- -5'
16206 5' -64.4 NC_004065.1 + 31887 0.71 0.382491
Target:  5'- cUGCUGGuGUacucgagagcgGGCCUgaCGCGGCGCGUCGc -3'
miRNA:   3'- -ACGGCCcCA-----------UCGGG--GCGCCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 208012 0.7 0.397879
Target:  5'- gGCCGGGuUAGUgCCgGCGGCGaugacCGUCGg -3'
miRNA:   3'- aCGGCCCcAUCGgGG-CGCCGU-----GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.