miRNA display CGI


Results 61 - 70 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 5' -64.4 NC_004065.1 + 870 0.71 0.352924
Target:  5'- cUGCCGGGcgagGgcGCCCCGCcGGCAUG-Cu -3'
miRNA:   3'- -ACGGCCC----CauCGGGGCG-CCGUGCaGc -5'
16206 5' -64.4 NC_004065.1 + 136574 0.71 0.352924
Target:  5'- aGCCGGGGagcUGGUCCUGCGGUcCGg-- -3'
miRNA:   3'- aCGGCCCC---AUCGGGGCGCCGuGCagc -5'
16206 5' -64.4 NC_004065.1 + 192539 0.71 0.374946
Target:  5'- cGCCaGGGGUccgcacAGCCCUGCGGgAUGagcuUCGg -3'
miRNA:   3'- aCGG-CCCCA------UCGGGGCGCCgUGC----AGC- -5'
16206 5' -64.4 NC_004065.1 + 31887 0.71 0.382491
Target:  5'- cUGCUGGuGUacucgagagcgGGCCUgaCGCGGCGCGUCGc -3'
miRNA:   3'- -ACGGCCcCA-----------UCGGG--GCGCCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 208012 0.7 0.397879
Target:  5'- gGCCGGGuUAGUgCCgGCGGCGaugacCGUCGg -3'
miRNA:   3'- aCGGCCCcAUCGgGG-CGCCGU-----GCAGC- -5'
16206 5' -64.4 NC_004065.1 + 202239 0.69 0.453896
Target:  5'- cUGCUGGGGcaggaGGCCCUccagacgGCGGCgcaGCGUCu -3'
miRNA:   3'- -ACGGCCCCa----UCGGGG-------CGCCG---UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 31693 0.69 0.463218
Target:  5'- aGCUgaGGGGgaucUGGCCguuCCGCGGCAUGUgCGa -3'
miRNA:   3'- aCGG--CCCC----AUCGG---GGCGCCGUGCA-GC- -5'
16206 5' -64.4 NC_004065.1 + 424 0.69 0.469203
Target:  5'- cGCCcggGGGGUGaacccccuggagccGCCCuCGCGGCguaACGUCc -3'
miRNA:   3'- aCGG---CCCCAU--------------CGGG-GCGCCG---UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 163358 0.69 0.48042
Target:  5'- gGCUGuGGGgGGCCCgGUGGCucuccaucaGCGUCa -3'
miRNA:   3'- aCGGC-CCCaUCGGGgCGCCG---------UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 102560 0.84 0.051027
Target:  5'- cGCCGGGGUcgGGUCCCGCGGCcaucaGCGUCc -3'
miRNA:   3'- aCGGCCCCA--UCGGGGCGCCG-----UGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.