miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 5' -64.4 NC_004065.1 + 102560 0.84 0.051027
Target:  5'- cGCCGGGGUcgGGUCCCGCGGCcaucaGCGUCc -3'
miRNA:   3'- aCGGCCCCA--UCGGGGCGCCG-----UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 87160 0.68 0.506788
Target:  5'- aGaCCGGGGUcguccaggAGCCCCugcaccgcGCGGU-CGUCGc -3'
miRNA:   3'- aC-GGCCCCA--------UCGGGG--------CGCCGuGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 94629 0.68 0.524704
Target:  5'- cUGaCGGGGUcgGGCgCgGcCGGCGCGUCa -3'
miRNA:   3'- -ACgGCCCCA--UCGgGgC-GCCGUGCAGc -5'
16206 5' -64.4 NC_004065.1 + 210843 0.65 0.681707
Target:  5'- gGCCGGaGGU-GUCCCGCcucggcagaaagcGGCAucggcagcauCGUCGu -3'
miRNA:   3'- aCGGCC-CCAuCGGGGCG-------------CCGU----------GCAGC- -5'
16206 5' -64.4 NC_004065.1 + 4278 0.73 0.286284
Target:  5'- cUGCUgGGGGUAGCCaCGaCGGCGUGUCGu -3'
miRNA:   3'- -ACGG-CCCCAUCGGgGC-GCCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 34450 0.73 0.292478
Target:  5'- gGCCGGGGgacGCgaauCCUGCGGCGCGauggCGg -3'
miRNA:   3'- aCGGCCCCau-CG----GGGCGCCGUGCa---GC- -5'
16206 5' -64.4 NC_004065.1 + 152043 0.72 0.34579
Target:  5'- -cCCGGGGcGGCUcgCCGCGGCcaGCGUCu -3'
miRNA:   3'- acGGCCCCaUCGG--GGCGCCG--UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 870 0.71 0.352924
Target:  5'- cUGCCGGGcgagGgcGCCCCGCcGGCAUG-Cu -3'
miRNA:   3'- -ACGGCCC----CauCGGGGCG-CCGUGCaGc -5'
16206 5' -64.4 NC_004065.1 + 31887 0.71 0.382491
Target:  5'- cUGCUGGuGUacucgagagcgGGCCUgaCGCGGCGCGUCGc -3'
miRNA:   3'- -ACGGCCcCA-----------UCGGG--GCGCCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 163358 0.69 0.48042
Target:  5'- gGCUGuGGGgGGCCCgGUGGCucuccaucaGCGUCa -3'
miRNA:   3'- aCGGC-CCCaUCGGGgCGCCG---------UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 202239 0.69 0.453896
Target:  5'- cUGCUGGGGcaggaGGCCCUccagacgGCGGCgcaGCGUCu -3'
miRNA:   3'- -ACGGCCCCa----UCGGGG-------CGCCG---UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 192539 0.71 0.374946
Target:  5'- cGCCaGGGGUccgcacAGCCCUGCGGgAUGagcuUCGg -3'
miRNA:   3'- aCGG-CCCCA------UCGGGGCGCCgUGC----AGC- -5'
16206 5' -64.4 NC_004065.1 + 6736 0.77 0.171018
Target:  5'- -aUCGGGGUAGCCgCgGCGGCACucggGUCGg -3'
miRNA:   3'- acGGCCCCAUCGG-GgCGCCGUG----CAGC- -5'
16206 5' -64.4 NC_004065.1 + 31693 0.69 0.463218
Target:  5'- aGCUgaGGGGgaucUGGCCguuCCGCGGCAUGUgCGa -3'
miRNA:   3'- aCGG--CCCC----AUCGG---GGCGCCGUGCA-GC- -5'
16206 5' -64.4 NC_004065.1 + 112851 0.74 0.245808
Target:  5'- cUGCCccaGGGGcGGaCCCCGuCGGCGCuGUCGg -3'
miRNA:   3'- -ACGG---CCCCaUC-GGGGC-GCCGUG-CAGC- -5'
16206 5' -64.4 NC_004065.1 + 136574 0.71 0.352924
Target:  5'- aGCCGGGGagcUGGUCCUGCGGUcCGg-- -3'
miRNA:   3'- aCGGCCCC---AUCGGGGCGCCGuGCagc -5'
16206 5' -64.4 NC_004065.1 + 424 0.69 0.469203
Target:  5'- cGCCcggGGGGUGaacccccuggagccGCCCuCGCGGCguaACGUCc -3'
miRNA:   3'- aCGG---CCCCAU--------------CGGG-GCGCCG---UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 167180 0.68 0.524704
Target:  5'- cUGCCGGGGgAGCCuUCGgGGUggGUgGg -3'
miRNA:   3'- -ACGGCCCCaUCGG-GGCgCCGugCAgC- -5'
16206 5' -64.4 NC_004065.1 + 146594 0.74 0.256865
Target:  5'- -aUCGGGGUGGCCaUCGgGGC-CGUCGg -3'
miRNA:   3'- acGGCCCCAUCGG-GGCgCCGuGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 137808 0.72 0.331834
Target:  5'- gUGUCGGGGaugugGGCCUguuCGCGGCccGCGUCu -3'
miRNA:   3'- -ACGGCCCCa----UCGGG---GCGCCG--UGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.