miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 5' -64.4 NC_004065.1 + 163358 0.69 0.48042
Target:  5'- gGCUGuGGGgGGCCCgGUGGCucuccaucaGCGUCa -3'
miRNA:   3'- aCGGC-CCCaUCGGGgCGCCG---------UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 31887 0.71 0.382491
Target:  5'- cUGCUGGuGUacucgagagcgGGCCUgaCGCGGCGCGUCGc -3'
miRNA:   3'- -ACGGCCcCA-----------UCGGG--GCGCCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 196630 0.66 0.677054
Target:  5'- cGCCGGGGcgagcgccucgagaGGCUCCGCGcGCAgaaGaUCGg -3'
miRNA:   3'- aCGGCCCCa-------------UCGGGGCGC-CGUg--C-AGC- -5'
16206 5' -64.4 NC_004065.1 + 119809 0.67 0.602117
Target:  5'- cGCCGGcGaAGCCCUcuucccucucgacggGCGGCggcGCGUCGc -3'
miRNA:   3'- aCGGCCcCaUCGGGG---------------CGCCG---UGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 94629 0.68 0.524704
Target:  5'- cUGaCGGGGUcgGGCgCgGcCGGCGCGUCa -3'
miRNA:   3'- -ACgGCCCCA--UCGgGgC-GCCGUGCAGc -5'
16206 5' -64.4 NC_004065.1 + 192539 0.71 0.374946
Target:  5'- cGCCaGGGGUccgcacAGCCCUGCGGgAUGagcuUCGg -3'
miRNA:   3'- aCGG-CCCCA------UCGGGGCGCCgUGC----AGC- -5'
16206 5' -64.4 NC_004065.1 + 56568 0.67 0.598376
Target:  5'- gUGCUGGcGUcgAGCgCCGCcaccGGUACGUCGa -3'
miRNA:   3'- -ACGGCCcCA--UCGgGGCG----CCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 136574 0.71 0.352924
Target:  5'- aGCCGGGGagcUGGUCCUGCGGUcCGg-- -3'
miRNA:   3'- aCGGCCCC---AUCGGGGCGCCGuGCagc -5'
16206 5' -64.4 NC_004065.1 + 870 0.71 0.352924
Target:  5'- cUGCCGGGcgagGgcGCCCCGCcGGCAUG-Cu -3'
miRNA:   3'- -ACGGCCC----CauCGGGGCG-CCGUGCaGc -5'
16206 5' -64.4 NC_004065.1 + 191952 0.68 0.533753
Target:  5'- aGCCucacGGGccuguuGUCCgGCGGCACGUUGg -3'
miRNA:   3'- aCGGc---CCCau----CGGGgCGCCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 136408 0.65 0.678916
Target:  5'- aGCCGGGGagcugguccugggGGCCCgGUGaGCcgAgGUCGg -3'
miRNA:   3'- aCGGCCCCa------------UCGGGgCGC-CG--UgCAGC- -5'
16206 5' -64.4 NC_004065.1 + 87160 0.68 0.506788
Target:  5'- aGaCCGGGGUcguccaggAGCCCCugcaccgcGCGGU-CGUCGc -3'
miRNA:   3'- aC-GGCCCCA--------UCGGGG--------CGCCGuGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 94956 0.67 0.57973
Target:  5'- cGCUGcGGGgcccGCUCCGCGGCugccGCGUaCGc -3'
miRNA:   3'- aCGGC-CCCau--CGGGGCGCCG----UGCA-GC- -5'
16206 5' -64.4 NC_004065.1 + 181987 0.67 0.607733
Target:  5'- cGUgGGGGaugAGgaCCCGCaGUACGUCGu -3'
miRNA:   3'- aCGgCCCCa--UCg-GGGCGcCGUGCAGC- -5'
16206 5' -64.4 NC_004065.1 + 40257 0.66 0.645256
Target:  5'- -cCCGGGGUuucuggggcGCCCCGCcgGGUACGa-- -3'
miRNA:   3'- acGGCCCCAu--------CGGGGCG--CCGUGCagc -5'
16206 5' -64.4 NC_004065.1 + 424 0.69 0.469203
Target:  5'- cGCCcggGGGGUGaacccccuggagccGCCCuCGCGGCguaACGUCc -3'
miRNA:   3'- aCGG---CCCCAU--------------CGGG-GCGCCG---UGCAGc -5'
16206 5' -64.4 NC_004065.1 + 208012 0.7 0.397879
Target:  5'- gGCCGGGuUAGUgCCgGCGGCGaugacCGUCGg -3'
miRNA:   3'- aCGGCCCcAUCGgGG-CGCCGU-----GCAGC- -5'
16206 5' -64.4 NC_004065.1 + 69583 0.69 0.497927
Target:  5'- aGCUGGGGUAagCCCGUGGCgACGg-- -3'
miRNA:   3'- aCGGCCCCAUcgGGGCGCCG-UGCagc -5'
16206 5' -64.4 NC_004065.1 + 31460 0.66 0.663054
Target:  5'- gGaCGGcGGUAGCCagggagaCCGCGGCuCGUUa -3'
miRNA:   3'- aCgGCC-CCAUCGG-------GGCGCCGuGCAGc -5'
16206 5' -64.4 NC_004065.1 + 27147 0.66 0.65463
Target:  5'- aGCCGGGuccgAGCaacacacgCCGCGGCAaaacgcccugcCGUCGu -3'
miRNA:   3'- aCGGCCCca--UCGg-------GGCGCCGU-----------GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.