Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16206 | 5' | -64.4 | NC_004065.1 | + | 27646 | 0.66 | 0.663989 |
Target: 5'- cUGCgCGGGG--GUgCUGCGGCcCGUCa -3' miRNA: 3'- -ACG-GCCCCauCGgGGCGCCGuGCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 23508 | 0.71 | 0.382491 |
Target: 5'- aGCCGGGGUAGCgCCuCGaucgacgaGCGUCGg -3' miRNA: 3'- aCGGCCCCAUCGgGGcGCcg------UGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 116123 | 0.71 | 0.367503 |
Target: 5'- cGCCGGaGGUAGCuggucggcguCCUGCGGCGgcUCGg -3' miRNA: 3'- aCGGCC-CCAUCG----------GGGCGCCGUgcAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 62707 | 0.71 | 0.367503 |
Target: 5'- gGUCuuGGGGUAGCuCCUGCGGC--GUCGg -3' miRNA: 3'- aCGG--CCCCAUCG-GGGCGCCGugCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 168635 | 0.73 | 0.268325 |
Target: 5'- gUGCCGcGGGcggAGCCggCGCGGCgACGUCGu -3' miRNA: 3'- -ACGGC-CCCa--UCGGg-GCGCCG-UGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 135070 | 0.7 | 0.446345 |
Target: 5'- aGCCGcGGaGcgGGCCCCGCaGCGCcaguaGUCGg -3' miRNA: 3'- aCGGC-CC-Ca-UCGGGGCGcCGUG-----CAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 149704 | 0.69 | 0.490013 |
Target: 5'- cGCCGGGGggccgcggccgcgccGGCCCUcggacucauaGCGGUccagcGCGUCGc -3' miRNA: 3'- aCGGCCCCa--------------UCGGGG----------CGCCG-----UGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 69583 | 0.69 | 0.497927 |
Target: 5'- aGCUGGGGUAagCCCGUGGCgACGg-- -3' miRNA: 3'- aCGGCCCCAUcgGGGCGCCG-UGCagc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 27147 | 0.66 | 0.65463 |
Target: 5'- aGCCGGGuccgAGCaacacacgCCGCGGCAaaacgcccugcCGUCGu -3' miRNA: 3'- aCGGCCCca--UCGg-------GGCGCCGU-----------GCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 65835 | 0.66 | 0.645256 |
Target: 5'- aUGCCGGcGG-AGaUCCGCGcGCACGaCGa -3' miRNA: 3'- -ACGGCC-CCaUCgGGGCGC-CGUGCaGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 99969 | 0.66 | 0.635873 |
Target: 5'- cGCCGcGGcGU-GCUcgggCCGCGGguCGUCGu -3' miRNA: 3'- aCGGC-CC-CAuCGG----GGCGCCguGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 163295 | 0.66 | 0.626487 |
Target: 5'- cGCCGGGGU----CCGaCGGCACGggCGc -3' miRNA: 3'- aCGGCCCCAucggGGC-GCCGUGCa-GC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 229153 | 0.66 | 0.626487 |
Target: 5'- aUGCCGgcGGGgcGCCCuCGCccGGCA-GUCa -3' miRNA: 3'- -ACGGC--CCCauCGGG-GCG--CCGUgCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 91834 | 0.67 | 0.598376 |
Target: 5'- aGCgGGGGUcguucuGGUcgCCCGCGGCACc--- -3' miRNA: 3'- aCGgCCCCA------UCG--GGGCGCCGUGcagc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 201817 | 0.66 | 0.626487 |
Target: 5'- uUGCCGGGcGUccgcAGCUCgaucaccgaguUGCGGUACGUgGa -3' miRNA: 3'- -ACGGCCC-CA----UCGGG-----------GCGCCGUGCAgC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 150718 | 0.67 | 0.58904 |
Target: 5'- cGCCGGuGGgaGGCCCa--GGC-CGUCGa -3' miRNA: 3'- aCGGCC-CCa-UCGGGgcgCCGuGCAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 198358 | 0.67 | 0.585313 |
Target: 5'- cGCCGGGGUccuucgccaggaacAGCgCCGacgucccguagccCGGCGuCGUCa -3' miRNA: 3'- aCGGCCCCA--------------UCGgGGC-------------GCCGU-GCAGc -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 201530 | 0.68 | 0.56121 |
Target: 5'- aUGCgacGG-AGCUCCGCGGCGCuGUCGg -3' miRNA: 3'- -ACGgccCCaUCGGGGCGCCGUG-CAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 152918 | 0.68 | 0.56121 |
Target: 5'- aUGUCGGcGGcgcuGCCgCCGCGGCAaaUCGa -3' miRNA: 3'- -ACGGCC-CCau--CGG-GGCGCCGUgcAGC- -5' |
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16206 | 5' | -64.4 | NC_004065.1 | + | 74633 | 0.68 | 0.55201 |
Target: 5'- cGCCGccaccgcuacccGGGUcugaGGUCcggaCCGCGGCGCGUCc -3' miRNA: 3'- aCGGC------------CCCA----UCGG----GGCGCCGUGCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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