miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16207 3' -59.1 NC_004065.1 + 63495 0.66 0.854211
Target:  5'- --cGuCGCGCaGCCAGGUGCGGa-UGg -3'
miRNA:   3'- caaC-GCGCGgUGGUCCACGUCgcACa -5'
16207 3' -59.1 NC_004065.1 + 152641 0.66 0.853455
Target:  5'- --aGCGUGauguucuccaccaUCACCGGGUGCucgucgcgcuGCGUGUa -3'
miRNA:   3'- caaCGCGC-------------GGUGGUCCACGu---------CGCACA- -5'
16207 3' -59.1 NC_004065.1 + 44146 0.66 0.838731
Target:  5'- --cGCGaccaGCuCACCAaacGGUGCAGCGa-- -3'
miRNA:   3'- caaCGCg---CG-GUGGU---CCACGUCGCaca -5'
16207 3' -59.1 NC_004065.1 + 97933 0.66 0.830724
Target:  5'- --cGCGCGUccggCACCGGcGUgGCAGCG-GUg -3'
miRNA:   3'- caaCGCGCG----GUGGUC-CA-CGUCGCaCA- -5'
16207 3' -59.1 NC_004065.1 + 209329 0.67 0.81505
Target:  5'- --cGUGUGCUACUGGGgacugcccggugccaGCGGCGUGg -3'
miRNA:   3'- caaCGCGCGGUGGUCCa--------------CGUCGCACa -5'
16207 3' -59.1 NC_004065.1 + 123676 0.67 0.805716
Target:  5'- --gGCGCGCUGCCc-GUGCAGCa--- -3'
miRNA:   3'- caaCGCGCGGUGGucCACGUCGcaca -5'
16207 3' -59.1 NC_004065.1 + 128367 0.67 0.805716
Target:  5'- -gUGCGC-CCAUCGGGgcuucgGCGGCGa-- -3'
miRNA:   3'- caACGCGcGGUGGUCCa-----CGUCGCaca -5'
16207 3' -59.1 NC_004065.1 + 103524 0.67 0.797076
Target:  5'- --cGCGCGgCGCauggcgacgCGGGUGCAGCGc-- -3'
miRNA:   3'- caaCGCGCgGUG---------GUCCACGUCGCaca -5'
16207 3' -59.1 NC_004065.1 + 78941 0.67 0.797076
Target:  5'- --cGgGCGCCACCAGGcccgcGCAGgGa-- -3'
miRNA:   3'- caaCgCGCGGUGGUCCa----CGUCgCaca -5'
16207 3' -59.1 NC_004065.1 + 116789 0.67 0.788296
Target:  5'- gGUUGCGCgGCCacguacguguugGCCgguaccgaccGGG-GCAGCGUGg -3'
miRNA:   3'- -CAACGCG-CGG------------UGG----------UCCaCGUCGCACa -5'
16207 3' -59.1 NC_004065.1 + 77817 0.67 0.787411
Target:  5'- -aUGCGgGCCagguucuugcggaACCAGGcuccggacGCGGCGUGg -3'
miRNA:   3'- caACGCgCGG-------------UGGUCCa-------CGUCGCACa -5'
16207 3' -59.1 NC_004065.1 + 121254 0.67 0.77035
Target:  5'- --cGC-CGCCACCucuAGGUcCAGCGUGc -3'
miRNA:   3'- caaCGcGCGGUGG---UCCAcGUCGCACa -5'
16207 3' -59.1 NC_004065.1 + 122703 0.68 0.7612
Target:  5'- --cGUGUGUCugCGGGUGCugAGCGUu- -3'
miRNA:   3'- caaCGCGCGGugGUCCACG--UCGCAca -5'
16207 3' -59.1 NC_004065.1 + 31483 0.68 0.7612
Target:  5'- --cGCGCGCgGaCCuGGUGCGGC-UGa -3'
miRNA:   3'- caaCGCGCGgU-GGuCCACGUCGcACa -5'
16207 3' -59.1 NC_004065.1 + 33061 0.68 0.7612
Target:  5'- --cGgGCGCCGCCuuGUGUcugggAGCGUGg -3'
miRNA:   3'- caaCgCGCGGUGGucCACG-----UCGCACa -5'
16207 3' -59.1 NC_004065.1 + 116009 0.68 0.714011
Target:  5'- --cGUGCGCCGCgGGG-GCAGCu--- -3'
miRNA:   3'- caaCGCGCGGUGgUCCaCGUCGcaca -5'
16207 3' -59.1 NC_004065.1 + 493 0.68 0.714011
Target:  5'- --cGCGCGCCGCguccgCGGGaagGCGGgGUGa -3'
miRNA:   3'- caaCGCGCGGUG-----GUCCa--CGUCgCACa -5'
16207 3' -59.1 NC_004065.1 + 146842 0.69 0.704344
Target:  5'- --aGCGgGCCGCCGGGagcgccuggucUGCAucggcGCGUGa -3'
miRNA:   3'- caaCGCgCGGUGGUCC-----------ACGU-----CGCACa -5'
16207 3' -59.1 NC_004065.1 + 161404 0.69 0.665186
Target:  5'- --aGCGaCGCCAgcugcucgcuguCCAGGUGCGaCGUGUc -3'
miRNA:   3'- caaCGC-GCGGU------------GGUCCACGUcGCACA- -5'
16207 3' -59.1 NC_004065.1 + 76567 0.69 0.659266
Target:  5'- -aUGCGCGaggucaccccguaauCCACCAuGGUGCAGaUGUGc -3'
miRNA:   3'- caACGCGC---------------GGUGGU-CCACGUC-GCACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.