miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16208 3' -58 NC_004065.1 + 127194 0.66 0.911765
Target:  5'- gGCGGGCCCucggggacgugguuCGGGAgCGGcGGCCg- -3'
miRNA:   3'- gUGUCUGGGuu------------GCCCUaGUC-CCGGag -5'
16208 3' -58 NC_004065.1 + 117167 0.66 0.904702
Target:  5'- gACAG-CgCCGACGGGGUCcgccccuGGGGCaggCg -3'
miRNA:   3'- gUGUCuG-GGUUGCCCUAG-------UCCCGga-G- -5'
16208 3' -58 NC_004065.1 + 89159 0.66 0.899199
Target:  5'- gAUGGACUCGcugGCGGcGGccuUCAGGGCCg- -3'
miRNA:   3'- gUGUCUGGGU---UGCC-CU---AGUCCCGGag -5'
16208 3' -58 NC_004065.1 + 120872 0.66 0.899199
Target:  5'- gCACcGGCUUgccCGGGGUCAGGGCggcguCUCg -3'
miRNA:   3'- -GUGuCUGGGuu-GCCCUAGUCCCG-----GAG- -5'
16208 3' -58 NC_004065.1 + 147485 0.66 0.895432
Target:  5'- cCAUguGGugCCGGCgGGGAacgucauccgcauguUCGGGGCCa- -3'
miRNA:   3'- -GUG--UCugGGUUG-CCCU---------------AGUCCCGGag -5'
16208 3' -58 NC_004065.1 + 210145 0.66 0.892879
Target:  5'- gGCGG---CGACGGGGuggaUCAGGGUCUCu -3'
miRNA:   3'- gUGUCuggGUUGCCCU----AGUCCCGGAG- -5'
16208 3' -58 NC_004065.1 + 114833 0.66 0.886346
Target:  5'- uCGCGGcgGCCaCGGCcGGAUcCAGGGCCa- -3'
miRNA:   3'- -GUGUC--UGG-GUUGcCCUA-GUCCCGGag -5'
16208 3' -58 NC_004065.1 + 91711 0.66 0.886346
Target:  5'- aGgAGGCCUcgcACGcGAUCAGGGCCg- -3'
miRNA:   3'- gUgUCUGGGu--UGCcCUAGUCCCGGag -5'
16208 3' -58 NC_004065.1 + 196617 0.66 0.886346
Target:  5'- gGCAGGCCUucagguucGACGGGuUCaugauauccaGGGGCCa- -3'
miRNA:   3'- gUGUCUGGG--------UUGCCCuAG----------UCCCGGag -5'
16208 3' -58 NC_004065.1 + 45728 0.66 0.879604
Target:  5'- gGCGGGCgCCAAUGGcguGGUagGGGGCUUCu -3'
miRNA:   3'- gUGUCUG-GGUUGCC---CUAg-UCCCGGAG- -5'
16208 3' -58 NC_004065.1 + 165666 0.67 0.872656
Target:  5'- uGCGGACgCGAUccgaGaGGAUCugccaucccAGGGCCUCg -3'
miRNA:   3'- gUGUCUGgGUUG----C-CCUAG---------UCCCGGAG- -5'
16208 3' -58 NC_004065.1 + 168594 0.67 0.865508
Target:  5'- gGCcGGCCC--UGGGua-GGGGCCUCu -3'
miRNA:   3'- gUGuCUGGGuuGCCCuagUCCCGGAG- -5'
16208 3' -58 NC_004065.1 + 21158 0.67 0.858163
Target:  5'- aCACAGcCCCGGCGaGGAUCcgcaacGGCuCUCc -3'
miRNA:   3'- -GUGUCuGGGUUGC-CCUAGuc----CCG-GAG- -5'
16208 3' -58 NC_004065.1 + 71645 0.67 0.858163
Target:  5'- uCACAcgUCC-GCGGGAcgaAGGGCCUCc -3'
miRNA:   3'- -GUGUcuGGGuUGCCCUag-UCCCGGAG- -5'
16208 3' -58 NC_004065.1 + 84187 0.67 0.857418
Target:  5'- --aAGAUCuCGACGGGcgugaaaaaccuaGUCAGGGgCUCg -3'
miRNA:   3'- gugUCUGG-GUUGCCC-------------UAGUCCCgGAG- -5'
16208 3' -58 NC_004065.1 + 121576 0.67 0.850629
Target:  5'- uGCGGACUCAGCcGGAUCccGGUCUg -3'
miRNA:   3'- gUGUCUGGGUUGcCCUAGucCCGGAg -5'
16208 3' -58 NC_004065.1 + 217111 0.67 0.846019
Target:  5'- aGCAGACCCAGCaGGAgcccuaucgUCAGGacgaugauagagguaGUCUCc -3'
miRNA:   3'- gUGUCUGGGUUGcCCU---------AGUCC---------------CGGAG- -5'
16208 3' -58 NC_004065.1 + 226591 0.67 0.842909
Target:  5'- aCGCGGAUCCGaugACGGGAccuuagUCGGGuugauGCCUUu -3'
miRNA:   3'- -GUGUCUGGGU---UGCCCU------AGUCC-----CGGAG- -5'
16208 3' -58 NC_004065.1 + 30155 0.67 0.835011
Target:  5'- -cCGGACCCAgccGCGGGAUgUAGcGGCUg- -3'
miRNA:   3'- guGUCUGGGU---UGCCCUA-GUC-CCGGag -5'
16208 3' -58 NC_004065.1 + 24844 0.67 0.835011
Target:  5'- aCGCGGcGCCCGauguugGCGGcGA-CGGcGGCCUCg -3'
miRNA:   3'- -GUGUC-UGGGU------UGCC-CUaGUC-CCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.