miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16208 5' -59.1 NC_004065.1 + 98847 0.66 0.876883
Target:  5'- aGCAGGAuGCGUGggUGCgCUG-CCGg- -3'
miRNA:   3'- -UGUCCU-CGCGCaaGCGgGACaGGCag -5'
16208 5' -59.1 NC_004065.1 + 179137 0.66 0.876883
Target:  5'- cGguGGAGUacCGUccUCGCCCgUGcCCGUCg -3'
miRNA:   3'- -UguCCUCGc-GCA--AGCGGG-ACaGGCAG- -5'
16208 5' -59.1 NC_004065.1 + 107848 0.66 0.872037
Target:  5'- -gAGGAGCucaacaaacucacCGCCCUGUUCGUCa -3'
miRNA:   3'- ugUCCUCGcgcaa--------GCGGGACAGGCAG- -5'
16208 5' -59.1 NC_004065.1 + 204619 0.66 0.870634
Target:  5'- --cGGGGCGUcugcauggauaugCGCCCUGUCCGcCc -3'
miRNA:   3'- uguCCUCGCGcaa----------GCGGGACAGGCaG- -5'
16208 5' -59.1 NC_004065.1 + 109440 0.66 0.86993
Target:  5'- cGCuGGcGGCGCGUguaucgccucaCGCagaucgagagCCUGUCCGUCu -3'
miRNA:   3'- -UGuCC-UCGCGCAa----------GCG----------GGACAGGCAG- -5'
16208 5' -59.1 NC_004065.1 + 129867 0.66 0.855444
Target:  5'- uCAGGAG-GUGUUCGaCCUGUgCCG-Cg -3'
miRNA:   3'- uGUCCUCgCGCAAGCgGGACA-GGCaG- -5'
16208 5' -59.1 NC_004065.1 + 91828 0.66 0.847922
Target:  5'- uACAGGAGCGgGggUCGUUCUGgucgcCCG-Cg -3'
miRNA:   3'- -UGUCCUCGCgCa-AGCGGGACa----GGCaG- -5'
16208 5' -59.1 NC_004065.1 + 69119 0.66 0.847922
Target:  5'- aGCAGGAcGCGCGgcgCGCCgacaaggugCUGgggaagCUGUCg -3'
miRNA:   3'- -UGUCCU-CGCGCaa-GCGG---------GACa-----GGCAG- -5'
16208 5' -59.1 NC_004065.1 + 23656 0.67 0.840999
Target:  5'- cGCAGGAGCcCGUUCacaauacacacgguuCCCcGUCCGUa -3'
miRNA:   3'- -UGUCCUCGcGCAAGc--------------GGGaCAGGCAg -5'
16208 5' -59.1 NC_004065.1 + 7065 0.67 0.832348
Target:  5'- uCGGGAGCugguCGUUCGCgCUGcCCGa- -3'
miRNA:   3'- uGUCCUCGc---GCAAGCGgGACaGGCag -5'
16208 5' -59.1 NC_004065.1 + 151672 0.67 0.79926
Target:  5'- gACAGcGAgcucuaccgccaGCGCGggCGCCCUGcaUCGUCu -3'
miRNA:   3'- -UGUC-CU------------CGCGCaaGCGGGACa-GGCAG- -5'
16208 5' -59.1 NC_004065.1 + 108730 0.67 0.798402
Target:  5'- -aGGGGGCGCGcgUCGCCCUcacgcggGUCU-UCa -3'
miRNA:   3'- ugUCCUCGCGCa-AGCGGGA-------CAGGcAG- -5'
16208 5' -59.1 NC_004065.1 + 71472 0.67 0.796683
Target:  5'- gGCAGGAGC-CGUUCGaCuggacccguaucgaCCUGUCCagacuGUCa -3'
miRNA:   3'- -UGUCCUCGcGCAAGC-G--------------GGACAGG-----CAG- -5'
16208 5' -59.1 NC_004065.1 + 168186 0.68 0.790625
Target:  5'- gACAGcGGCGCGa-CGCCUUGUuugacgacgCCGUCg -3'
miRNA:   3'- -UGUCcUCGCGCaaGCGGGACA---------GGCAG- -5'
16208 5' -59.1 NC_004065.1 + 124039 0.68 0.78186
Target:  5'- uACAGcAGCGUGUcCGUCUcgaacgUGUCCGUCc -3'
miRNA:   3'- -UGUCcUCGCGCAaGCGGG------ACAGGCAG- -5'
16208 5' -59.1 NC_004065.1 + 139247 0.68 0.78186
Target:  5'- cCGGGAcaGCGCG-UCGCcucCCUGUuucCCGUCu -3'
miRNA:   3'- uGUCCU--CGCGCaAGCG---GGACA---GGCAG- -5'
16208 5' -59.1 NC_004065.1 + 109636 0.68 0.772972
Target:  5'- -aAGGAGCaGCGUcCGCCCgaUCCGcCg -3'
miRNA:   3'- ugUCCUCG-CGCAaGCGGGacAGGCaG- -5'
16208 5' -59.1 NC_004065.1 + 34615 0.68 0.772076
Target:  5'- gGCGGGAGCGUacGUguacggcUCGCCgUGgaagaccucggCCGUCa -3'
miRNA:   3'- -UGUCCUCGCG--CA-------AGCGGgACa----------GGCAG- -5'
16208 5' -59.1 NC_004065.1 + 201686 0.69 0.72697
Target:  5'- uGCGGcGGCacaacGCGgacagGCCCUGUCCGUCu -3'
miRNA:   3'- -UGUCcUCG-----CGCaag--CGGGACAGGCAG- -5'
16208 5' -59.1 NC_004065.1 + 120187 0.69 0.717514
Target:  5'- -gGGGAGCgacgccGCGcUCGCCCUG-CCGaUCu -3'
miRNA:   3'- ugUCCUCG------CGCaAGCGGGACaGGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.