miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 63264 0.66 0.76327
Target:  5'- cCGCCGUGGCcaccAACGGCgGUaaCGCcaccuacauuuugccGGCCg -3'
miRNA:   3'- uGCGGCGCUG----UUGCCGgCG--GCG---------------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 89746 0.66 0.759737
Target:  5'- uCGCCuGCGGCGuCGG-CGCagggaauuCGUAGCCg -3'
miRNA:   3'- uGCGG-CGCUGUuGCCgGCG--------GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 8207 0.66 0.759737
Target:  5'- -aGCCGguagGACAGCGgcgcauacccacGCCGCCGUGGgCg -3'
miRNA:   3'- ugCGGCg---CUGUUGC------------CGGCGGCGUCgG- -5'
1621 3' -62.5 NC_001347.2 + 35309 0.66 0.759737
Target:  5'- gGCGCCGgGACucuggugcuAUGGCUGCUcaauGCCa -3'
miRNA:   3'- -UGCGGCgCUGu--------UGCCGGCGGcgu-CGG- -5'
1621 3' -62.5 NC_001347.2 + 2165 0.66 0.759737
Target:  5'- gACGCgGCagcaGCAGCGG-CGCCGaCGGUg -3'
miRNA:   3'- -UGCGgCGc---UGUUGCCgGCGGC-GUCGg -5'
1621 3' -62.5 NC_001347.2 + 87244 0.66 0.759737
Target:  5'- gACGgUGCGAgCAguuggggauGCGGCgCGCCGUAcCCg -3'
miRNA:   3'- -UGCgGCGCU-GU---------UGCCG-GCGGCGUcGG- -5'
1621 3' -62.5 NC_001347.2 + 183603 0.66 0.757076
Target:  5'- gACGCCgguuuGCG-CAgcGCGGCagaGCCgaugagcccucuaaGCAGCCg -3'
miRNA:   3'- -UGCGG-----CGCuGU--UGCCGg--CGG--------------CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 109647 0.66 0.750835
Target:  5'- -gGCCGUGuuCAccUGGCCGCCcugGCAGgCCg -3'
miRNA:   3'- ugCGGCGCu-GUu-GCCGGCGG---CGUC-GG- -5'
1621 3' -62.5 NC_001347.2 + 95471 0.66 0.750835
Target:  5'- gGCG-CGCGuCAcGCGG-CGCCGguGUCg -3'
miRNA:   3'- -UGCgGCGCuGU-UGCCgGCGGCguCGG- -5'
1621 3' -62.5 NC_001347.2 + 74107 0.66 0.750835
Target:  5'- --aCCG-GACGACGGUCaGCCGCGGg- -3'
miRNA:   3'- ugcGGCgCUGUUGCCGG-CGGCGUCgg -5'
1621 3' -62.5 NC_001347.2 + 198090 0.66 0.750835
Target:  5'- -gGUCGCGACGgugACGGUC-CCGCucGUCg -3'
miRNA:   3'- ugCGGCGCUGU---UGCCGGcGGCGu-CGG- -5'
1621 3' -62.5 NC_001347.2 + 113031 0.66 0.750835
Target:  5'- -gGgUGCGACAugGacGCCGCCuCuGCCg -3'
miRNA:   3'- ugCgGCGCUGUugC--CGGCGGcGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 174246 0.66 0.750835
Target:  5'- gACGaccuCCGCGu---CGGUCGCCGCcuccgcGGCCc -3'
miRNA:   3'- -UGC----GGCGCuguuGCCGGCGGCG------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 148030 0.66 0.750835
Target:  5'- ---aCuCGACAGCGGCgucugUGCaCGCAGCCg -3'
miRNA:   3'- ugcgGcGCUGUUGCCG-----GCG-GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 86209 0.66 0.74994
Target:  5'- cCGCCGUGc---CGGUCGUCGCaccgcucGGCCa -3'
miRNA:   3'- uGCGGCGCuguuGCCGGCGGCG-------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 106285 0.66 0.745451
Target:  5'- aAUGCCGcCGcCAACGccgagcucugucggcGCCGCCGCucacuuuccucGCCa -3'
miRNA:   3'- -UGCGGC-GCuGUUGC---------------CGGCGGCGu----------CGG- -5'
1621 3' -62.5 NC_001347.2 + 147906 0.66 0.741844
Target:  5'- -gGCCGUGgguggcGCggUGGCCuCCGUGGUCg -3'
miRNA:   3'- ugCGGCGC------UGuuGCCGGcGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 142795 0.66 0.741844
Target:  5'- cCGCCGCaACAGCGGCgacagacggCGUCGCA-UCa -3'
miRNA:   3'- uGCGGCGcUGUUGCCG---------GCGGCGUcGG- -5'
1621 3' -62.5 NC_001347.2 + 208818 0.66 0.741844
Target:  5'- -aGCCGCuGCGcCGcGCCGCCGUccucgaagcGCCa -3'
miRNA:   3'- ugCGGCGcUGUuGC-CGGCGGCGu--------CGG- -5'
1621 3' -62.5 NC_001347.2 + 85956 0.66 0.741844
Target:  5'- gACGCCgGCGcGCGaacccguguaguGCGaGCCGCCGCcacCCg -3'
miRNA:   3'- -UGCGG-CGC-UGU------------UGC-CGGCGGCGuc-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.