Results 61 - 80 of 340 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 126039 | 0.73 | 0.345125 |
Target: 5'- uCGCCGUGaACAACGaaaCGCUGCAGCUc -3' miRNA: 3'- uGCGGCGC-UGUUGCcg-GCGGCGUCGG- -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 157219 | 0.72 | 0.413833 |
Target: 5'- uGCGCUGCaGccggaggaaGCGGCGGUagaaaCGUCGCAGCCa -3' miRNA: 3'- -UGCGGCG-C---------UGUUGCCG-----GCGGCGUCGG- -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 110129 | 0.72 | 0.390006 |
Target: 5'- -gGCCGCGAuCAGCgaGGCCGaaGCcGCCa -3' miRNA: 3'- ugCGGCGCU-GUUG--CCGGCggCGuCGG- -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 153776 | 0.72 | 0.421972 |
Target: 5'- uGCGCCGuCGACGccgcucaGGCCGUgGUAGUCc -3' miRNA: 3'- -UGCGGC-GCUGUug-----CCGGCGgCGUCGG- -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 113189 | 0.72 | 0.397848 |
Target: 5'- -aGCCGcCGGCGugGCGGCCuGaCUGCGGCUg -3' miRNA: 3'- ugCGGC-GCUGU--UGCCGG-C-GGCGUCGG- -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 17336 | 0.72 | 0.382265 |
Target: 5'- uUGCCGCG-CGuAUGGCCGCCG--GCCa -3' miRNA: 3'- uGCGGCGCuGU-UGCCGGCGGCguCGG- -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 82599 | 0.72 | 0.390006 |
Target: 5'- -aGCCGCGGCucggcACGGCCGCCaccCAGauCCa -3' miRNA: 3'- ugCGGCGCUGu----UGCCGGCGGc--GUC--GG- -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 75396 | 0.72 | 0.397848 |
Target: 5'- cCGCUccaaGCGGgAGCGGCgGCCGUGGCg -3' miRNA: 3'- uGCGG----CGCUgUUGCCGgCGGCGUCGg -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 110521 | 0.72 | 0.373869 |
Target: 5'- gGCGCgGCGGCGAagaaaauCGGCCGCgaauggaagCGCGcGCCa -3' miRNA: 3'- -UGCGgCGCUGUU-------GCCGGCG---------GCGU-CGG- -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 113418 | 0.72 | 0.374627 |
Target: 5'- gACG-CGuCGACAGCaGuGCUGCCGCAGCg -3' miRNA: 3'- -UGCgGC-GCUGUUG-C-CGGCGGCGUCGg -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 38420 | 0.72 | 0.390006 |
Target: 5'- uCGCCGCuGGCGGCGacgucguccccGCCGCCGUccccgucgccGGCCc -3' miRNA: 3'- uGCGGCG-CUGUUGC-----------CGGCGGCG----------UCGG- -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 81550 | 0.72 | 0.390006 |
Target: 5'- uCGCCGUcgucacguGGCAGCGGCgGCaaCAGCCa -3' miRNA: 3'- uGCGGCG--------CUGUUGCCGgCGgcGUCGG- -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 38531 | 0.72 | 0.405791 |
Target: 5'- gACGCUGguucaggugcCGACGcACGGCCGUCaGCAGCg -3' miRNA: 3'- -UGCGGC----------GCUGU-UGCCGGCGG-CGUCGg -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 210413 | 0.72 | 0.421972 |
Target: 5'- gAUGCUGUGAUGACGGCgGUCucaaCGGCCg -3' miRNA: 3'- -UGCGGCGCUGUUGCCGgCGGc---GUCGG- -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 37996 | 0.72 | 0.413833 |
Target: 5'- -aGCuCG-GGCAGCaGCCGCCGCgcGGCCu -3' miRNA: 3'- ugCG-GCgCUGUUGcCGGCGGCG--UCGG- -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 88634 | 0.72 | 0.405791 |
Target: 5'- uGCaCCGCGGCuugAGCGGCgGCCugcGCAGCUu -3' miRNA: 3'- -UGcGGCGCUG---UUGCCGgCGG---CGUCGG- -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 181805 | 0.71 | 0.455465 |
Target: 5'- gGCGCCGC--CAACGGCaUGCCGCcccucaccccGCCa -3' miRNA: 3'- -UGCGGCGcuGUUGCCG-GCGGCGu---------CGG- -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 44029 | 0.71 | 0.464061 |
Target: 5'- aACGCgGUGGCGACGGCaGCgGUGGUg -3' miRNA: 3'- -UGCGgCGCUGUUGCCGgCGgCGUCGg -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 39523 | 0.71 | 0.464061 |
Target: 5'- gGCGCgGCGACAu--GCCGuuGCgcugGGCCa -3' miRNA: 3'- -UGCGgCGCUGUugcCGGCggCG----UCGG- -5' |
|||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 112474 | 0.71 | 0.464061 |
Target: 5'- uCGuCCGaggaCGACGACGacGCCGCCGCGGUUu -3' miRNA: 3'- uGC-GGC----GCUGUUGC--CGGCGGCGUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home