miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 142651 1.11 0.000975
Target:  5'- aACGCCGCGACAACGGCCGCCGCAGCCa -3'
miRNA:   3'- -UGCGGCGCUGUUGCCGGCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 98048 0.88 0.037555
Target:  5'- aACGCCGCGGCGGCaGCgGCCGCGGCUu -3'
miRNA:   3'- -UGCGGCGCUGUUGcCGgCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 63105 0.86 0.052151
Target:  5'- cCGCCGUGGCcgccGCGGCCGCCGCuguGGCCg -3'
miRNA:   3'- uGCGGCGCUGu---UGCCGGCGGCG---UCGG- -5'
1621 3' -62.5 NC_001347.2 + 47133 0.84 0.074024
Target:  5'- -gGCgGCGGCAAUGGCCGCgGCAGCg -3'
miRNA:   3'- ugCGgCGCUGUUGCCGGCGgCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 156641 0.84 0.075886
Target:  5'- gGCGCCGCugccgGGCcuCGGCCGCCGCcGCCa -3'
miRNA:   3'- -UGCGGCG-----CUGuuGCCGGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 66504 0.83 0.079746
Target:  5'- aACGCCGCGAUcgaGGCGGCgGCgauCGCAGCCu -3'
miRNA:   3'- -UGCGGCGCUG---UUGCCGgCG---GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 145533 0.82 0.093398
Target:  5'- --cCCGUGGCcaagcccuccacccuGACGGCCGCCGCGGCCg -3'
miRNA:   3'- ugcGGCGCUG---------------UUGCCGGCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 76633 0.8 0.123943
Target:  5'- -gGCCGCGGCGGaGGCCGaaGCGGCCu -3'
miRNA:   3'- ugCGGCGCUGUUgCCGGCggCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 67640 0.8 0.13007
Target:  5'- aGCGgCaGCGACAuGCGGCCGCUGCcGCCg -3'
miRNA:   3'- -UGCgG-CGCUGU-UGCCGGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 93386 0.8 0.133238
Target:  5'- aACGCUGUGGCAACGcGCCGCCGUcccGUCg -3'
miRNA:   3'- -UGCGGCGCUGUUGC-CGGCGGCGu--CGG- -5'
1621 3' -62.5 NC_001347.2 + 68740 0.8 0.133238
Target:  5'- -gGCCGUGG-AGCGaguGCCGCCGCAGCCg -3'
miRNA:   3'- ugCGGCGCUgUUGC---CGGCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 147871 0.8 0.139787
Target:  5'- gGCGCCGCGGgAAaGGCCGUuggCGUAGCCa -3'
miRNA:   3'- -UGCGGCGCUgUUgCCGGCG---GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 197033 0.79 0.153777
Target:  5'- cGCGCCGCaggaucGCAcGCGGCUGCCGCAGUUc -3'
miRNA:   3'- -UGCGGCGc-----UGU-UGCCGGCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 30590 0.79 0.157467
Target:  5'- cGCGCCggGCGGCuuccuGCGGCCgGCCGCGGUg -3'
miRNA:   3'- -UGCGG--CGCUGu----UGCCGG-CGGCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 142857 0.78 0.169024
Target:  5'- aGCGCCGCGGCAccagagacagagACcGCCGCCGC-GCUg -3'
miRNA:   3'- -UGCGGCGCUGU------------UGcCGGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 160955 0.78 0.173042
Target:  5'- cCGCCGCuACAGCGG-CGCCGCcauGCCa -3'
miRNA:   3'- uGCGGCGcUGUUGCCgGCGGCGu--CGG- -5'
1621 3' -62.5 NC_001347.2 + 106400 0.78 0.17881
Target:  5'- aACGCCG-GACGagcuggacaaguacaGCGGCuCGCCGCAGaCCa -3'
miRNA:   3'- -UGCGGCgCUGU---------------UGCCG-GCGGCGUC-GG- -5'
1621 3' -62.5 NC_001347.2 + 39377 0.78 0.181334
Target:  5'- gACGCCGUGGCc-CGGCguCGUCGUAGCCg -3'
miRNA:   3'- -UGCGGCGCUGuuGCCG--GCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 222753 0.78 0.185611
Target:  5'- cUGCCGCGGCcAUuGCCGCCGCcGCCc -3'
miRNA:   3'- uGCGGCGCUGuUGcCGGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 92669 0.78 0.185611
Target:  5'- -gGCCuuGAUAACGGCCGuuGCAGCa -3'
miRNA:   3'- ugCGGcgCUGUUGCCGGCggCGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.