miRNA display CGI


Results 21 - 40 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 197619 0.78 0.185611
Target:  5'- cGCGCCGcCGACuc--GCUGCCGCAGCUg -3'
miRNA:   3'- -UGCGGC-GCUGuugcCGGCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 208212 0.77 0.189976
Target:  5'- cCGCCGCuGCucuuccucagaGACGGCCGCCGCcGCUa -3'
miRNA:   3'- uGCGGCGcUG-----------UUGCCGGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 154930 0.77 0.193982
Target:  5'- uACGuuGCuacugccGGCGACGGCucCGCCGCAGCUa -3'
miRNA:   3'- -UGCggCG-------CUGUUGCCG--GCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 87611 0.77 0.194431
Target:  5'- cACGCCcgugcccaccaGCGACGGCGGCUGCUGUugcucGCCa -3'
miRNA:   3'- -UGCGG-----------CGCUGUUGCCGGCGGCGu----CGG- -5'
1621 3' -62.5 NC_001347.2 + 2407 0.77 0.194431
Target:  5'- -gGCCGCG-CGGCGGCUGCUGCccgAGCUg -3'
miRNA:   3'- ugCGGCGCuGUUGCCGGCGGCG---UCGG- -5'
1621 3' -62.5 NC_001347.2 + 21776 0.77 0.194431
Target:  5'- gGCGCUGgGACuuUGGCUGCUGCgGGCCg -3'
miRNA:   3'- -UGCGGCgCUGuuGCCGGCGGCG-UCGG- -5'
1621 3' -62.5 NC_001347.2 + 90147 0.77 0.203617
Target:  5'- cACGCacacaaaGCGACGGCaaaGGCUuaGCCGCGGCCg -3'
miRNA:   3'- -UGCGg------CGCUGUUG---CCGG--CGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 173537 0.77 0.208349
Target:  5'- cGCGUgGCGGCGGCGGUggugGCgGCAGCCu -3'
miRNA:   3'- -UGCGgCGCUGUUGCCGg---CGgCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 153251 0.76 0.24364
Target:  5'- -gGCCgGCGACGGCGGuUCGCCGUgguuguuGGCCg -3'
miRNA:   3'- ugCGG-CGCUGUUGCC-GGCGGCG-------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 198979 0.76 0.244186
Target:  5'- -aGCCGCGGCGAUucgGGCgUGCCGCGauGCCg -3'
miRNA:   3'- ugCGGCGCUGUUG---CCG-GCGGCGU--CGG- -5'
1621 3' -62.5 NC_001347.2 + 158092 0.76 0.249705
Target:  5'- aGCGCCGCGcugcGCGGCGGCCucauCgGCAGCg -3'
miRNA:   3'- -UGCGGCGC----UGUUGCCGGc---GgCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 195663 0.76 0.249705
Target:  5'- cACGCC-CGAgGaucugGCGGCCGCCgGCGGUCa -3'
miRNA:   3'- -UGCGGcGCUgU-----UGCCGGCGG-CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 168809 0.75 0.261052
Target:  5'- cGCGCgGUGGCcaAACGGCCGCgCGaccCGGCCg -3'
miRNA:   3'- -UGCGgCGCUG--UUGCCGGCG-GC---GUCGG- -5'
1621 3' -62.5 NC_001347.2 + 140957 0.75 0.261052
Target:  5'- uACGCCGUGGCcuucCaGCCGCUGCuAGCCu -3'
miRNA:   3'- -UGCGGCGCUGuu--GcCGGCGGCG-UCGG- -5'
1621 3' -62.5 NC_001347.2 + 81618 0.75 0.266881
Target:  5'- -aGCCGUGGCAuugagacgcACGgcGCCGCCGcCGGCCu -3'
miRNA:   3'- ugCGGCGCUGU---------UGC--CGGCGGC-GUCGG- -5'
1621 3' -62.5 NC_001347.2 + 13523 0.75 0.278245
Target:  5'- cCGCCG-GGCGGCccgGGCCGCCGUgcuggagGGCCg -3'
miRNA:   3'- uGCGGCgCUGUUG---CCGGCGGCG-------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 135463 0.75 0.278854
Target:  5'- cCGCCGCGAgaccCGGaaGCCGUCGCGGUCg -3'
miRNA:   3'- uGCGGCGCU----GUUgcCGGCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 88603 0.75 0.278854
Target:  5'- gGCGaCCugaGCGGCGGCGGCCuG-CGCGGCCu -3'
miRNA:   3'- -UGC-GG---CGCUGUUGCCGG-CgGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 206863 0.75 0.278854
Target:  5'- cAUGCuCGUGGCAACGGCgUGCCGC-GCUc -3'
miRNA:   3'- -UGCG-GCGCUGUUGCCG-GCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 191208 0.75 0.284999
Target:  5'- aACGCCGCu----CGGagcaCCGCCGCAGCCc -3'
miRNA:   3'- -UGCGGCGcuguuGCC----GGCGGCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.