miRNA display CGI


Results 61 - 80 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 164487 0.73 0.367094
Target:  5'- uGCGCUGCaGAUccaGGCCGUggUGCAGCCa -3'
miRNA:   3'- -UGCGGCG-CUGuugCCGGCG--GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 110521 0.72 0.373869
Target:  5'- gGCGCgGCGGCGAagaaaauCGGCCGCgaauggaagCGCGcGCCa -3'
miRNA:   3'- -UGCGgCGCUGUU-------GCCGGCG---------GCGU-CGG- -5'
1621 3' -62.5 NC_001347.2 + 113418 0.72 0.374627
Target:  5'- gACG-CGuCGACAGCaGuGCUGCCGCAGCg -3'
miRNA:   3'- -UGCgGC-GCUGUUG-C-CGGCGGCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 17336 0.72 0.382265
Target:  5'- uUGCCGCG-CGuAUGGCCGCCG--GCCa -3'
miRNA:   3'- uGCGGCGCuGU-UGCCGGCGGCguCGG- -5'
1621 3' -62.5 NC_001347.2 + 82599 0.72 0.390006
Target:  5'- -aGCCGCGGCucggcACGGCCGCCaccCAGauCCa -3'
miRNA:   3'- ugCGGCGCUGu----UGCCGGCGGc--GUC--GG- -5'
1621 3' -62.5 NC_001347.2 + 38420 0.72 0.390006
Target:  5'- uCGCCGCuGGCGGCGacgucguccccGCCGCCGUccccgucgccGGCCc -3'
miRNA:   3'- uGCGGCG-CUGUUGC-----------CGGCGGCG----------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 81550 0.72 0.390006
Target:  5'- uCGCCGUcgucacguGGCAGCGGCgGCaaCAGCCa -3'
miRNA:   3'- uGCGGCG--------CUGUUGCCGgCGgcGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 110129 0.72 0.390006
Target:  5'- -gGCCGCGAuCAGCgaGGCCGaaGCcGCCa -3'
miRNA:   3'- ugCGGCGCU-GUUG--CCGGCggCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 113189 0.72 0.397848
Target:  5'- -aGCCGcCGGCGugGCGGCCuGaCUGCGGCUg -3'
miRNA:   3'- ugCGGC-GCUGU--UGCCGG-C-GGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 75396 0.72 0.397848
Target:  5'- cCGCUccaaGCGGgAGCGGCgGCCGUGGCg -3'
miRNA:   3'- uGCGG----CGCUgUUGCCGgCGGCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 38531 0.72 0.405791
Target:  5'- gACGCUGguucaggugcCGACGcACGGCCGUCaGCAGCg -3'
miRNA:   3'- -UGCGGC----------GCUGU-UGCCGGCGG-CGUCGg -5'
1621 3' -62.5 NC_001347.2 + 88634 0.72 0.405791
Target:  5'- uGCaCCGCGGCuugAGCGGCgGCCugcGCAGCUu -3'
miRNA:   3'- -UGcGGCGCUG---UUGCCGgCGG---CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 37996 0.72 0.413833
Target:  5'- -aGCuCG-GGCAGCaGCCGCCGCgcGGCCu -3'
miRNA:   3'- ugCG-GCgCUGUUGcCGGCGGCG--UCGG- -5'
1621 3' -62.5 NC_001347.2 + 157219 0.72 0.413833
Target:  5'- uGCGCUGCaGccggaggaaGCGGCGGUagaaaCGUCGCAGCCa -3'
miRNA:   3'- -UGCGGCG-C---------UGUUGCCG-----GCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 210413 0.72 0.421972
Target:  5'- gAUGCUGUGAUGACGGCgGUCucaaCGGCCg -3'
miRNA:   3'- -UGCGGCGCUGUUGCCGgCGGc---GUCGG- -5'
1621 3' -62.5 NC_001347.2 + 153776 0.72 0.421972
Target:  5'- uGCGCCGuCGACGccgcucaGGCCGUgGUAGUCc -3'
miRNA:   3'- -UGCGGC-GCUGUug-----CCGGCGgCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 170786 0.71 0.430207
Target:  5'- uCGCCGUGGCGuugACGGCCGCUaucgagaacaGUAGgCa -3'
miRNA:   3'- uGCGGCGCUGU---UGCCGGCGG----------CGUCgG- -5'
1621 3' -62.5 NC_001347.2 + 118019 0.71 0.430207
Target:  5'- aGCGuCCGCGGCGACGGUccuuCGUCG-AGCUc -3'
miRNA:   3'- -UGC-GGCGCUGUUGCCG----GCGGCgUCGG- -5'
1621 3' -62.5 NC_001347.2 + 158420 0.71 0.430207
Target:  5'- aGCGCUGCGuacGCGugGGCUggaaaGCCGUgcugGGCCu -3'
miRNA:   3'- -UGCGGCGC---UGUugCCGG-----CGGCG----UCGG- -5'
1621 3' -62.5 NC_001347.2 + 1647 0.71 0.430207
Target:  5'- cCGCgCGCGAC-GCuGCUGCCuCAGCCg -3'
miRNA:   3'- uGCG-GCGCUGuUGcCGGCGGcGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.