miRNA display CGI


Results 81 - 100 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 2041 0.71 0.436027
Target:  5'- cGCGCCgugcGCGAUAGCGGgagccgugggguCCGCuguaccugugccucCGCAGCCg -3'
miRNA:   3'- -UGCGG----CGCUGUUGCC------------GGCG--------------GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 190041 0.71 0.438536
Target:  5'- cACGCCGCu-CGACGGggaCCGCCGCcGUa -3'
miRNA:   3'- -UGCGGCGcuGUUGCC---GGCGGCGuCGg -5'
1621 3' -62.5 NC_001347.2 + 131714 0.71 0.438536
Target:  5'- gACGaggaGaCGACGAcCGGCCGUCGCcGCCg -3'
miRNA:   3'- -UGCgg--C-GCUGUU-GCCGGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 990 0.71 0.438536
Target:  5'- aGCGCCGUcACAGCGGgCacuggugcgaguGCUGCGGCUa -3'
miRNA:   3'- -UGCGGCGcUGUUGCCgG------------CGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 77298 0.71 0.438536
Target:  5'- gGCGUCGUcguacuugGGCGugGGCCGCgGCguggaugacgaGGCCg -3'
miRNA:   3'- -UGCGGCG--------CUGUugCCGGCGgCG-----------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 177854 0.71 0.438536
Target:  5'- gAUGCUGCaGcACAACGGCCcCCaGCAGUCu -3'
miRNA:   3'- -UGCGGCG-C-UGUUGCCGGcGG-CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 142997 0.71 0.44442
Target:  5'- -aGCCgGCGGCGGCGGUgguggaggagguugCGCCGCAaGCg -3'
miRNA:   3'- ugCGG-CGCUGUUGCCG--------------GCGGCGU-CGg -5'
1621 3' -62.5 NC_001347.2 + 187350 0.71 0.446956
Target:  5'- uGCGuuGCGugGccgUGGCgCGUCGCGGCUa -3'
miRNA:   3'- -UGCggCGCugUu--GCCG-GCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 196608 0.71 0.446956
Target:  5'- aACGCCGUGcuggcccuGCGuaucauuCGGCUGCUGCGcGCCa -3'
miRNA:   3'- -UGCGGCGC--------UGUu------GCCGGCGGCGU-CGG- -5'
1621 3' -62.5 NC_001347.2 + 80437 0.71 0.455465
Target:  5'- gACGCCGUagccGAUAuCGGCCGCCaacGCCg -3'
miRNA:   3'- -UGCGGCG----CUGUuGCCGGCGGcguCGG- -5'
1621 3' -62.5 NC_001347.2 + 197551 0.71 0.455465
Target:  5'- aGCGUgGcCGGCGugGCGGCCGaCgGCAGCg -3'
miRNA:   3'- -UGCGgC-GCUGU--UGCCGGC-GgCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 157988 0.71 0.455465
Target:  5'- cGCGCgGaggaggcuCGACGGCGGCaGCUGCGGCg -3'
miRNA:   3'- -UGCGgC--------GCUGUUGCCGgCGGCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 181805 0.71 0.455465
Target:  5'- gGCGCCGC--CAACGGCaUGCCGCcccucaccccGCCa -3'
miRNA:   3'- -UGCGGCGcuGUUGCCG-GCGGCGu---------CGG- -5'
1621 3' -62.5 NC_001347.2 + 174027 0.71 0.464061
Target:  5'- aACGCCGgcggaGACGACGGCgGUUuCAGCUg -3'
miRNA:   3'- -UGCGGCg----CUGUUGCCGgCGGcGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 178553 0.71 0.464061
Target:  5'- cGCGUCGCGACAagaauacggaGgGGCCG-CGCAcuuuuGCCa -3'
miRNA:   3'- -UGCGGCGCUGU----------UgCCGGCgGCGU-----CGG- -5'
1621 3' -62.5 NC_001347.2 + 39523 0.71 0.464061
Target:  5'- gGCGCgGCGACAu--GCCGuuGCgcugGGCCa -3'
miRNA:   3'- -UGCGgCGCUGUugcCGGCggCG----UCGG- -5'
1621 3' -62.5 NC_001347.2 + 89560 0.71 0.464061
Target:  5'- cGCGCCcCGAgaAGCGGCCGC-GCAccGCCu -3'
miRNA:   3'- -UGCGGcGCUg-UUGCCGGCGgCGU--CGG- -5'
1621 3' -62.5 NC_001347.2 + 112474 0.71 0.464061
Target:  5'- uCGuCCGaggaCGACGACGacGCCGCCGCGGUUu -3'
miRNA:   3'- uGC-GGC----GCUGUUGC--CGGCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 166116 0.71 0.464061
Target:  5'- cGCGUaaggCGCGAUccgcuuCGGCCGCCGCcGCa -3'
miRNA:   3'- -UGCG----GCGCUGuu----GCCGGCGGCGuCGg -5'
1621 3' -62.5 NC_001347.2 + 44029 0.71 0.464061
Target:  5'- aACGCgGUGGCGACGGCaGCgGUGGUg -3'
miRNA:   3'- -UGCGgCGCUGUUGCCGgCGgCGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.