miRNA display CGI


Results 21 - 40 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 79049 0.66 0.741844
Target:  5'- -aGCCGCGAgaaGGCGcGUCGgCGCcaaaugAGCCg -3'
miRNA:   3'- ugCGGCGCUg--UUGC-CGGCgGCG------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 85956 0.66 0.741844
Target:  5'- gACGCCgGCGcGCGaacccguguaguGCGaGCCGCCGCcacCCg -3'
miRNA:   3'- -UGCGG-CGC-UGU------------UGC-CGGCGGCGuc-GG- -5'
1621 3' -62.5 NC_001347.2 + 147906 0.66 0.741844
Target:  5'- -gGCCGUGgguggcGCggUGGCCuCCGUGGUCg -3'
miRNA:   3'- ugCGGCGC------UGuuGCCGGcGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 142795 0.66 0.741844
Target:  5'- cCGCCGCaACAGCGGCgacagacggCGUCGCA-UCa -3'
miRNA:   3'- uGCGGCGcUGUUGCCG---------GCGGCGUcGG- -5'
1621 3' -62.5 NC_001347.2 + 208818 0.66 0.741844
Target:  5'- -aGCCGCuGCGcCGcGCCGCCGUccucgaagcGCCa -3'
miRNA:   3'- ugCGGCGcUGUuGC-CGGCGGCGu--------CGG- -5'
1621 3' -62.5 NC_001347.2 + 63514 0.66 0.741844
Target:  5'- gAUGCCGC-ACAc--GCCacagGCCGUAGCCa -3'
miRNA:   3'- -UGCGGCGcUGUugcCGG----CGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 711 0.66 0.73913
Target:  5'- gGCGCCaaGGCGGCGccagcacgcgccguGCaCGUCGCuGCCu -3'
miRNA:   3'- -UGCGGcgCUGUUGC--------------CG-GCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 195437 0.66 0.736409
Target:  5'- aACcCCGUGGauCAGCcGCCGCCuccacugccaacccaGCAGCCg -3'
miRNA:   3'- -UGcGGCGCU--GUUGcCGGCGG---------------CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 152387 0.66 0.736409
Target:  5'- uCGCCuGCGACGgcggguggagaugagGCGGCguggacugggaCgaggaggagggGCCGCAGCCg -3'
miRNA:   3'- uGCGG-CGCUGU---------------UGCCG-----------G-----------CGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 77071 0.66 0.73277
Target:  5'- gACGaaGCGGCAGCGGCgGCagaaGaggaGGCg -3'
miRNA:   3'- -UGCggCGCUGUUGCCGgCGg---Cg---UCGg -5'
1621 3' -62.5 NC_001347.2 + 1982 0.66 0.73277
Target:  5'- -gGCgGgGACGACGucCCGCCaGCGGCg -3'
miRNA:   3'- ugCGgCgCUGUUGCc-GGCGG-CGUCGg -5'
1621 3' -62.5 NC_001347.2 + 184383 0.66 0.73277
Target:  5'- gUGCgGgGACGACGGgCGuuGCGGg- -3'
miRNA:   3'- uGCGgCgCUGUUGCCgGCggCGUCgg -5'
1621 3' -62.5 NC_001347.2 + 20432 0.66 0.73277
Target:  5'- uGCGCCGCaGCGGCuuuguGCCGagaCCGUcGCCa -3'
miRNA:   3'- -UGCGGCGcUGUUGc----CGGC---GGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 111624 0.66 0.73277
Target:  5'- uGCGCaGCGACAuggACGGCgaCGugcguaCCGCGGCa -3'
miRNA:   3'- -UGCGgCGCUGU---UGCCG--GC------GGCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 189871 0.66 0.73277
Target:  5'- cGCGCCGggucgccugucCGGCAGCagccgGGCCGCCucgacCAcGCCg -3'
miRNA:   3'- -UGCGGC-----------GCUGUUG-----CCGGCGGc----GU-CGG- -5'
1621 3' -62.5 NC_001347.2 + 82317 0.66 0.73277
Target:  5'- aGCGCUGCGGuuuCcACGcccaguGCCGgUGCGGCCu -3'
miRNA:   3'- -UGCGGCGCU---GuUGC------CGGCgGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 27672 0.66 0.73277
Target:  5'- cGCGuuacauCCGCGACGAacugcCGGCUGCucagacguuaCGCGGCUc -3'
miRNA:   3'- -UGC------GGCGCUGUU-----GCCGGCG----------GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 199723 0.66 0.723621
Target:  5'- cCGCUGCGAUcuGCGGuuGCCGaC-GCg -3'
miRNA:   3'- uGCGGCGCUGu-UGCCggCGGC-GuCGg -5'
1621 3' -62.5 NC_001347.2 + 82480 0.66 0.723621
Target:  5'- cGCGCCGacgcucauCGGCGuccguagucACGGCCGaggccagCGCAGCg -3'
miRNA:   3'- -UGCGGC--------GCUGU---------UGCCGGCg------GCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 65371 0.66 0.723621
Target:  5'- cGCGCCGUgcgucugcccGugAGCaccGCUGCCGC-GCCc -3'
miRNA:   3'- -UGCGGCG----------CugUUGc--CGGCGGCGuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.