miRNA display CGI


Results 41 - 60 of 340 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 174097 0.66 0.723621
Target:  5'- gUGuCCGCgGACAcccGCGGCCGuacCCGCcccagcagaccAGCCa -3'
miRNA:   3'- uGC-GGCG-CUGU---UGCCGGC---GGCG-----------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 82723 0.66 0.723621
Target:  5'- -gGCgGUGguGCAGCGGCgGCUgaGCGGUCa -3'
miRNA:   3'- ugCGgCGC--UGUUGCCGgCGG--CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 101249 0.66 0.723621
Target:  5'- gUGCCGCGuguggcCAGCGG-CGCCGguuuGCCc -3'
miRNA:   3'- uGCGGCGCu-----GUUGCCgGCGGCgu--CGG- -5'
1621 3' -62.5 NC_001347.2 + 103565 0.66 0.723621
Target:  5'- uACGCCGCuGCuGCaGGCCuGUCGUgaacuguuuuuGGCCg -3'
miRNA:   3'- -UGCGGCGcUGuUG-CCGG-CGGCG-----------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 44351 0.66 0.723621
Target:  5'- aGCGCCGacCGAcCAGcCGGCCGauuCGCccGCCg -3'
miRNA:   3'- -UGCGGC--GCU-GUU-GCCGGCg--GCGu-CGG- -5'
1621 3' -62.5 NC_001347.2 + 128461 0.66 0.723621
Target:  5'- aGCGgCGCGACGGC-GCgCGCaCGCGGg- -3'
miRNA:   3'- -UGCgGCGCUGUUGcCG-GCG-GCGUCgg -5'
1621 3' -62.5 NC_001347.2 + 199723 0.66 0.723621
Target:  5'- cCGCUGCGAUcuGCGGuuGCCGaC-GCg -3'
miRNA:   3'- uGCGGCGCUGu-UGCCggCGGC-GuCGg -5'
1621 3' -62.5 NC_001347.2 + 82480 0.66 0.723621
Target:  5'- cGCGCCGacgcucauCGGCGuccguagucACGGCCGaggccagCGCAGCg -3'
miRNA:   3'- -UGCGGC--------GCUGU---------UGCCGGCg------GCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 65371 0.66 0.723621
Target:  5'- cGCGCCGUgcgucugcccGugAGCaccGCUGCCGC-GCCc -3'
miRNA:   3'- -UGCGGCG----------CugUUGc--CGGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 180415 0.66 0.723621
Target:  5'- -aGCaggaauGCGGCAccCGGCUGCaCGUGGCCu -3'
miRNA:   3'- ugCGg-----CGCUGUu-GCCGGCG-GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 14112 0.66 0.722702
Target:  5'- aACGUCGCGaACGACGGUgaaaaauCGgagcacuuuCCGCGGCg -3'
miRNA:   3'- -UGCGGCGC-UGUUGCCG-------GC---------GGCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 117337 0.66 0.720863
Target:  5'- cCGCgGCGACGgggccuucccaaGCGGCaaucucacgacucaCGUCGuCGGCCa -3'
miRNA:   3'- uGCGgCGCUGU------------UGCCG--------------GCGGC-GUCGG- -5'
1621 3' -62.5 NC_001347.2 + 67024 0.66 0.714404
Target:  5'- -gGCUGCGGaGACaGCUGCgGCGGUCc -3'
miRNA:   3'- ugCGGCGCUgUUGcCGGCGgCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 163308 0.66 0.714404
Target:  5'- -gGUCGCGGCGACucGUCGCgCGcCAGUCg -3'
miRNA:   3'- ugCGGCGCUGUUGc-CGGCG-GC-GUCGG- -5'
1621 3' -62.5 NC_001347.2 + 159442 0.66 0.714404
Target:  5'- cCGUCGuCGuCuGCGGCCGCgGCcGCUc -3'
miRNA:   3'- uGCGGC-GCuGuUGCCGGCGgCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 1207 0.66 0.714404
Target:  5'- gGCG-CGCGGCGuuuuUGGCCaacagcacggGCCGC-GCCa -3'
miRNA:   3'- -UGCgGCGCUGUu---GCCGG----------CGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 100953 0.66 0.714404
Target:  5'- cCGCCGCGAUggagAACuGGUCGgCGCucgAGCUc -3'
miRNA:   3'- uGCGGCGCUG----UUG-CCGGCgGCG---UCGG- -5'
1621 3' -62.5 NC_001347.2 + 152205 0.66 0.713479
Target:  5'- cGCGCaaggacaaguuuuUGC-ACAugGuGCUGCCGCGGCg -3'
miRNA:   3'- -UGCG-------------GCGcUGUugC-CGGCGGCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 111109 0.66 0.713479
Target:  5'- cACGCUGacCGGCGAUcaGGCCGuucauuuggaacaCCGaCAGCCg -3'
miRNA:   3'- -UGCGGC--GCUGUUG--CCGGC-------------GGC-GUCGG- -5'
1621 3' -62.5 NC_001347.2 + 128260 0.66 0.713479
Target:  5'- uCGCCuaucaccuguacgGUGGCGACGGCgccacUGCCGCuGCg -3'
miRNA:   3'- uGCGG-------------CGCUGUUGCCG-----GCGGCGuCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.