miRNA display CGI


Results 61 - 80 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 58849 0.66 0.712553
Target:  5'- cGCGUCuuccccuuccacCGGCAGCGGCaCGCCGgAGUg -3'
miRNA:   3'- -UGCGGc-----------GCUGUUGCCG-GCGGCgUCGg -5'
1621 3' -62.5 NC_001347.2 + 190875 0.67 0.705126
Target:  5'- gACGCgGUGACAGaaggaGGUgGCCacGguGCCc -3'
miRNA:   3'- -UGCGgCGCUGUUg----CCGgCGG--CguCGG- -5'
1621 3' -62.5 NC_001347.2 + 126888 0.67 0.705126
Target:  5'- -gGCCgGCuACGGCGGCCGCauCGaCGGCa -3'
miRNA:   3'- ugCGG-CGcUGUUGCCGGCG--GC-GUCGg -5'
1621 3' -62.5 NC_001347.2 + 12723 0.67 0.705126
Target:  5'- uCGCCGCGAgAucugGCGGuuGgCUGaCAGCg -3'
miRNA:   3'- uGCGGCGCUgU----UGCCggC-GGC-GUCGg -5'
1621 3' -62.5 NC_001347.2 + 163623 0.67 0.705126
Target:  5'- aGCGCCGa-GCcGCGGCUGCCcgGGUCg -3'
miRNA:   3'- -UGCGGCgcUGuUGCCGGCGGcgUCGG- -5'
1621 3' -62.5 NC_001347.2 + 16394 0.67 0.705126
Target:  5'- gACGCCGaCG-CGuUGGCCGCCuGCguuGGCg -3'
miRNA:   3'- -UGCGGC-GCuGUuGCCGGCGG-CG---UCGg -5'
1621 3' -62.5 NC_001347.2 + 197731 0.67 0.705126
Target:  5'- uGCGaCGCGACGccgACGGCCaggucauCCGCgAGUCg -3'
miRNA:   3'- -UGCgGCGCUGU---UGCCGGc------GGCG-UCGG- -5'
1621 3' -62.5 NC_001347.2 + 38369 0.67 0.705126
Target:  5'- cCGCuauCGCGcACGGCGcguccCCGCCGgCGGCCu -3'
miRNA:   3'- uGCG---GCGC-UGUUGCc----GGCGGC-GUCGG- -5'
1621 3' -62.5 NC_001347.2 + 165590 0.67 0.702332
Target:  5'- gGCGgCGCGGCAcuucGUCGCCcagucuguagaccgGCAGCCg -3'
miRNA:   3'- -UGCgGCGCUGUugc-CGGCGG--------------CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 116656 0.67 0.695795
Target:  5'- -aGCUGCaugagcACGGCGccGCCGCCGUcGCCa -3'
miRNA:   3'- ugCGGCGc-----UGUUGC--CGGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 156798 0.67 0.695795
Target:  5'- ----gGCGGCAGCGGCaGCgGCgGGCCa -3'
miRNA:   3'- ugcggCGCUGUUGCCGgCGgCG-UCGG- -5'
1621 3' -62.5 NC_001347.2 + 108418 0.67 0.695795
Target:  5'- cCGCgGCGACAAuCaGCUGCagguGCAGCa -3'
miRNA:   3'- uGCGgCGCUGUU-GcCGGCGg---CGUCGg -5'
1621 3' -62.5 NC_001347.2 + 167229 0.67 0.695795
Target:  5'- cGCGCCGCGA-GACGGaCGCaagguaaacaggUGCAcGCCc -3'
miRNA:   3'- -UGCGGCGCUgUUGCCgGCG------------GCGU-CGG- -5'
1621 3' -62.5 NC_001347.2 + 182121 0.67 0.695795
Target:  5'- --cCCGCGGgucuuCGACGucGCUGCCGUAGCUa -3'
miRNA:   3'- ugcGGCGCU-----GUUGC--CGGCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 196143 0.67 0.695795
Target:  5'- cCGCUGCcugcCGGCGGCCcuguGCCGCGgguuGCCc -3'
miRNA:   3'- uGCGGCGcu--GUUGCCGG----CGGCGU----CGG- -5'
1621 3' -62.5 NC_001347.2 + 14273 0.67 0.686418
Target:  5'- -gGCCcUGACGGCGcugcaguuauGCCGCCGgAGCUc -3'
miRNA:   3'- ugCGGcGCUGUUGC----------CGGCGGCgUCGG- -5'
1621 3' -62.5 NC_001347.2 + 178865 0.67 0.685478
Target:  5'- gGCcuCCGuCGAgAGCGaguuguccucgucGCCGCCGCuGCCg -3'
miRNA:   3'- -UGc-GGC-GCUgUUGC-------------CGGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 38314 0.67 0.677003
Target:  5'- cCGCCgGCGGCGccguACGGCUGCgGaGGCa -3'
miRNA:   3'- uGCGG-CGCUGU----UGCCGGCGgCgUCGg -5'
1621 3' -62.5 NC_001347.2 + 88540 0.67 0.677003
Target:  5'- gACGCCGCcGC--CGGCC-UCGuCGGCCa -3'
miRNA:   3'- -UGCGGCGcUGuuGCCGGcGGC-GUCGG- -5'
1621 3' -62.5 NC_001347.2 + 2374 0.67 0.677003
Target:  5'- gGCGCUGgGACGcgaguCGGCgC-CCGCcGCCg -3'
miRNA:   3'- -UGCGGCgCUGUu----GCCG-GcGGCGuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.