miRNA display CGI


Results 81 - 100 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 88540 0.67 0.677003
Target:  5'- gACGCCGCcGC--CGGCC-UCGuCGGCCa -3'
miRNA:   3'- -UGCGGCGcUGuuGCCGGcGGC-GUCGG- -5'
1621 3' -62.5 NC_001347.2 + 38314 0.67 0.677003
Target:  5'- cCGCCgGCGGCGccguACGGCUGCgGaGGCa -3'
miRNA:   3'- uGCGG-CGCUGU----UGCCGGCGgCgUCGg -5'
1621 3' -62.5 NC_001347.2 + 181315 0.67 0.677003
Target:  5'- --aCCGUuuCAGCGGCCGgCGUgaGGCCa -3'
miRNA:   3'- ugcGGCGcuGUUGCCGGCgGCG--UCGG- -5'
1621 3' -62.5 NC_001347.2 + 103699 0.67 0.677003
Target:  5'- -aGCaCGUGcuuuACAACGGCUGCUGCGucgugacggcGCCu -3'
miRNA:   3'- ugCG-GCGC----UGUUGCCGGCGGCGU----------CGG- -5'
1621 3' -62.5 NC_001347.2 + 197082 0.67 0.67606
Target:  5'- gACGCCGagcugagcaaccaCGcCAACcgcuGCCGCCGCAagGCCc -3'
miRNA:   3'- -UGCGGC-------------GCuGUUGc---CGGCGGCGU--CGG- -5'
1621 3' -62.5 NC_001347.2 + 40334 0.67 0.673227
Target:  5'- cACGcCCGCGACAcaccCGGCacacacccacccgGCCGC-GCCc -3'
miRNA:   3'- -UGC-GGCGCUGUu---GCCGg------------CGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 209148 0.67 0.667555
Target:  5'- -aGuaGCGGCAGCcacaGCgGCgGCAGCCg -3'
miRNA:   3'- ugCggCGCUGUUGc---CGgCGgCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 25377 0.67 0.667555
Target:  5'- gGCGCCGUggguuGGCAGCuGGCCGgcuugaCCGCGuuguugagcGCCu -3'
miRNA:   3'- -UGCGGCG-----CUGUUG-CCGGC------GGCGU---------CGG- -5'
1621 3' -62.5 NC_001347.2 + 88219 0.67 0.667555
Target:  5'- gACGCCGCu-CAcgcuguccgaGgGGUCGCUGCcGCCg -3'
miRNA:   3'- -UGCGGCGcuGU----------UgCCGGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 185343 0.67 0.667555
Target:  5'- -gGuCCGUG-CGAgcaGGCCGCCGCcgugggGGCCg -3'
miRNA:   3'- ugC-GGCGCuGUUg--CCGGCGGCG------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 109458 0.67 0.667555
Target:  5'- gACGCCccGCGuCAcCGGCgGCgGC-GCCa -3'
miRNA:   3'- -UGCGG--CGCuGUuGCCGgCGgCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 105203 0.67 0.667555
Target:  5'- cCGUCGCGGCcaggauuucACcGCCGCUaugGCGGCCa -3'
miRNA:   3'- uGCGGCGCUGu--------UGcCGGCGG---CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 104341 0.67 0.667555
Target:  5'- cCGCUGgaucCGGCAcGCGGCCGgCGUagaacGGCCg -3'
miRNA:   3'- uGCGGC----GCUGU-UGCCGGCgGCG-----UCGG- -5'
1621 3' -62.5 NC_001347.2 + 38770 0.67 0.667555
Target:  5'- aGCGUCGCGcGCGGgGuGCCcacGCC-CAGCCg -3'
miRNA:   3'- -UGCGGCGC-UGUUgC-CGG---CGGcGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 151897 0.67 0.667555
Target:  5'- gGCGCCGCaggguuccuccGACAACGGugauucuguaaCCGCCGgcgugguuuccCGGUCg -3'
miRNA:   3'- -UGCGGCG-----------CUGUUGCC-----------GGCGGC-----------GUCGG- -5'
1621 3' -62.5 NC_001347.2 + 158035 0.67 0.667555
Target:  5'- gGCGCCG-GACAGCaGGCgCGUcaCGUagAGCCc -3'
miRNA:   3'- -UGCGGCgCUGUUG-CCG-GCG--GCG--UCGG- -5'
1621 3' -62.5 NC_001347.2 + 208105 0.67 0.667555
Target:  5'- gGCGCaC-CGACGGCGGa-GCCGCGucgcucGCCg -3'
miRNA:   3'- -UGCG-GcGCUGUUGCCggCGGCGU------CGG- -5'
1621 3' -62.5 NC_001347.2 + 157019 0.67 0.667555
Target:  5'- cGCGCUuuGCGACucugGGcCCGCUGguGCUg -3'
miRNA:   3'- -UGCGG--CGCUGuug-CC-GGCGGCguCGG- -5'
1621 3' -62.5 NC_001347.2 + 80875 0.67 0.658083
Target:  5'- cCGCCGCuAgAAUGGCgGUgagugacgaCGCAGCCc -3'
miRNA:   3'- uGCGGCGcUgUUGCCGgCG---------GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 228463 0.67 0.658083
Target:  5'- cCGCgGaugGACGuucuaacuguacACGGCgGCCGUGGCCu -3'
miRNA:   3'- uGCGgCg--CUGU------------UGCCGgCGGCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.