miRNA display CGI


Results 101 - 120 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 7953 0.67 0.658083
Target:  5'- gUGgUGCGACuGACGGUgGCgGCGGCa -3'
miRNA:   3'- uGCgGCGCUG-UUGCCGgCGgCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 2102 0.67 0.658083
Target:  5'- gGCGCCGcCGGCGGgGGCgCGauuUGCGuGCCu -3'
miRNA:   3'- -UGCGGC-GCUGUUgCCG-GCg--GCGU-CGG- -5'
1621 3' -62.5 NC_001347.2 + 63381 0.67 0.658083
Target:  5'- -gGCUGCacGACuccACGGCCG-UGCAGCUg -3'
miRNA:   3'- ugCGGCG--CUGu--UGCCGGCgGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 79318 0.67 0.658083
Target:  5'- uGCGCgGCGACAAgcugUGGCUGCacaCGgAGCa -3'
miRNA:   3'- -UGCGgCGCUGUU----GCCGGCG---GCgUCGg -5'
1621 3' -62.5 NC_001347.2 + 28736 0.67 0.658083
Target:  5'- uACGCCGgGGCccuaGGCCGCa-CGGCa -3'
miRNA:   3'- -UGCGGCgCUGuug-CCGGCGgcGUCGg -5'
1621 3' -62.5 NC_001347.2 + 106894 0.67 0.658083
Target:  5'- cACGCCGCuguugaAACGGCUaCCGCuacgacguaaAGCCg -3'
miRNA:   3'- -UGCGGCGcug---UUGCCGGcGGCG----------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 101159 0.67 0.658083
Target:  5'- uUGaCCaGCGGCu-UGGCCGCgGCGGCg -3'
miRNA:   3'- uGC-GG-CGCUGuuGCCGGCGgCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 149918 0.67 0.658083
Target:  5'- cCGCCGUGGguuuuaAGCGGCaguaCGCCGCcGCUu -3'
miRNA:   3'- uGCGGCGCUg-----UUGCCG----GCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 80875 0.67 0.658083
Target:  5'- cCGCCGCuAgAAUGGCgGUgagugacgaCGCAGCCc -3'
miRNA:   3'- uGCGGCGcUgUUGCCGgCG---------GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 228463 0.67 0.658083
Target:  5'- cCGCgGaugGACGuucuaacuguacACGGCgGCCGUGGCCu -3'
miRNA:   3'- uGCGgCg--CUGU------------UGCCGgCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 208722 0.67 0.658083
Target:  5'- aGCGCCGUGGucuCGGUCGCCa-GGCUg -3'
miRNA:   3'- -UGCGGCGCUguuGCCGGCGGcgUCGG- -5'
1621 3' -62.5 NC_001347.2 + 170096 0.67 0.658083
Target:  5'- uCGCCGUcuccCGACGGCaCGCCGUcuguGCUg -3'
miRNA:   3'- uGCGGCGcu--GUUGCCG-GCGGCGu---CGG- -5'
1621 3' -62.5 NC_001347.2 + 148602 0.67 0.658083
Target:  5'- gGCGgCGUGACcggcgguGCGGUCGCgGgUGGCCg -3'
miRNA:   3'- -UGCgGCGCUGu------UGCCGGCGgC-GUCGG- -5'
1621 3' -62.5 NC_001347.2 + 164683 0.67 0.658083
Target:  5'- gGCGCCGUGGCc---GuuGCCGCGuuagcGCCg -3'
miRNA:   3'- -UGCGGCGCUGuugcCggCGGCGU-----CGG- -5'
1621 3' -62.5 NC_001347.2 + 96365 0.67 0.655238
Target:  5'- uCGCCGUggagGGCAacaccaaccaggcgGCGGCCGUgCGCAucGCCu -3'
miRNA:   3'- uGCGGCG----CUGU--------------UGCCGGCG-GCGU--CGG- -5'
1621 3' -62.5 NC_001347.2 + 128768 0.67 0.655238
Target:  5'- aACGUgaccuuccuaGCGACGGCGGCCauggagcugcacucaCGCGGCCg -3'
miRNA:   3'- -UGCGg---------CGCUGUUGCCGGcg-------------GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 96511 0.68 0.648593
Target:  5'- -gGCCGCGACAAgGcGCUGgCCGUGGa- -3'
miRNA:   3'- ugCGGCGCUGUUgC-CGGC-GGCGUCgg -5'
1621 3' -62.5 NC_001347.2 + 113463 0.68 0.648593
Target:  5'- aGC-CCGUcACGGuCGGCCGCCGUgaGGUCu -3'
miRNA:   3'- -UGcGGCGcUGUU-GCCGGCGGCG--UCGG- -5'
1621 3' -62.5 NC_001347.2 + 75771 0.68 0.648593
Target:  5'- aACGCCGUcuCGuCGuuGCCGCCGguGCUc -3'
miRNA:   3'- -UGCGGCGcuGUuGC--CGGCGGCguCGG- -5'
1621 3' -62.5 NC_001347.2 + 193659 0.68 0.648593
Target:  5'- gUGCCGCcGCucGCGcGCCuccGCuCGCGGCCg -3'
miRNA:   3'- uGCGGCGcUGu-UGC-CGG---CG-GCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.