miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 711 0.66 0.73913
Target:  5'- gGCGCCaaGGCGGCGccagcacgcgccguGCaCGUCGCuGCCu -3'
miRNA:   3'- -UGCGGcgCUGUUGC--------------CG-GCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 870 0.7 0.481501
Target:  5'- gGCGCCcauggcccaGCG-CAACGGCauguCGCCGC-GCCc -3'
miRNA:   3'- -UGCGG---------CGCuGUUGCCG----GCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 990 0.71 0.438536
Target:  5'- aGCGCCGUcACAGCGGgCacuggugcgaguGCUGCGGCUa -3'
miRNA:   3'- -UGCGGCGcUGUUGCCgG------------CGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 1207 0.66 0.714404
Target:  5'- gGCG-CGCGGCGuuuuUGGCCaacagcacggGCCGC-GCCa -3'
miRNA:   3'- -UGCgGCGCUGUu---GCCGG----------CGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 1257 0.69 0.554098
Target:  5'- uCGCagCGCGACGcgGGCaCGCUGCuGCCg -3'
miRNA:   3'- uGCG--GCGCUGUugCCG-GCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 1647 0.71 0.430207
Target:  5'- cCGCgCGCGAC-GCuGCUGCCuCAGCCg -3'
miRNA:   3'- uGCG-GCGCUGuUGcCGGCGGcGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 1695 0.71 0.470998
Target:  5'- cGCGCCGaggaGGCGACGGCgcucggacgggaGCUGC-GCCg -3'
miRNA:   3'- -UGCGGCg---CUGUUGCCGg-----------CGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 1757 0.68 0.59164
Target:  5'- gGCGCUGCaGACGcCGGgcaggCGaCUGCAGCCg -3'
miRNA:   3'- -UGCGGCG-CUGUuGCCg----GC-GGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 1856 0.68 0.59164
Target:  5'- cGCGUCGCuGCuGACGGCCGUgCGuCGGCa -3'
miRNA:   3'- -UGCGGCGcUG-UUGCCGGCG-GC-GUCGg -5'
1621 3' -62.5 NC_001347.2 + 1982 0.66 0.73277
Target:  5'- -gGCgGgGACGACGucCCGCCaGCGGCg -3'
miRNA:   3'- ugCGgCgCUGUUGCc-GGCGG-CGUCGg -5'
1621 3' -62.5 NC_001347.2 + 2041 0.71 0.436027
Target:  5'- cGCGCCgugcGCGAUAGCGGgagccgugggguCCGCuguaccugugccucCGCAGCCg -3'
miRNA:   3'- -UGCGG----CGCUGUUGCC------------GGCG--------------GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 2102 0.67 0.658083
Target:  5'- gGCGCCGcCGGCGGgGGCgCGauuUGCGuGCCu -3'
miRNA:   3'- -UGCGGC-GCUGUUgCCG-GCg--GCGU-CGG- -5'
1621 3' -62.5 NC_001347.2 + 2165 0.66 0.759737
Target:  5'- gACGCgGCagcaGCAGCGG-CGCCGaCGGUg -3'
miRNA:   3'- -UGCGgCGc---UGUUGCCgGCGGC-GUCGg -5'
1621 3' -62.5 NC_001347.2 + 2374 0.67 0.677003
Target:  5'- gGCGCUGgGACGcgaguCGGCgC-CCGCcGCCg -3'
miRNA:   3'- -UGCGGCgCUGUu----GCCG-GcGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 2407 0.77 0.194431
Target:  5'- -gGCCGCG-CGGCGGCUGCUGCccgAGCUg -3'
miRNA:   3'- ugCGGCGCuGUUGCCGGCGGCG---UCGG- -5'
1621 3' -62.5 NC_001347.2 + 2486 0.68 0.610585
Target:  5'- cGCGCCGCGcuguggGCGcGCGaGCCGCacggGCAGUUg -3'
miRNA:   3'- -UGCGGCGC------UGU-UGC-CGGCGg---CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 5569 0.7 0.499254
Target:  5'- uGCGCgGUGGgGGCGuGCC-CCGCAGaCCc -3'
miRNA:   3'- -UGCGgCGCUgUUGC-CGGcGGCGUC-GG- -5'
1621 3' -62.5 NC_001347.2 + 6311 0.7 0.517292
Target:  5'- uACGCCGUacccCAACGGCCG-CGCAaggcgugaucacGCCa -3'
miRNA:   3'- -UGCGGCGcu--GUUGCCGGCgGCGU------------CGG- -5'
1621 3' -62.5 NC_001347.2 + 7907 0.73 0.338015
Target:  5'- -gGCgGCGACAA-GGCCGCCugAGCCg -3'
miRNA:   3'- ugCGgCGCUGUUgCCGGCGGcgUCGG- -5'
1621 3' -62.5 NC_001347.2 + 7953 0.67 0.658083
Target:  5'- gUGgUGCGACuGACGGUgGCgGCGGCa -3'
miRNA:   3'- uGCgGCGCUG-UUGCCGgCGgCGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.