miRNA display CGI


Results 41 - 60 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 26047 0.66 0.723621
Target:  5'- uACGCCGC-----CGGgCGCUGCGGUCc -3'
miRNA:   3'- -UGCGGCGcuguuGCCgGCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 27672 0.66 0.73277
Target:  5'- cGCGuuacauCCGCGACGAacugcCGGCUGCucagacguuaCGCGGCUc -3'
miRNA:   3'- -UGC------GGCGCUGUU-----GCCGGCG----------GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 28736 0.67 0.658083
Target:  5'- uACGCCGgGGCccuaGGCCGCa-CGGCa -3'
miRNA:   3'- -UGCGGCgCUGuug-CCGGCGgcGUCGg -5'
1621 3' -62.5 NC_001347.2 + 30590 0.79 0.157467
Target:  5'- cGCGCCggGCGGCuuccuGCGGCCgGCCGCGGUg -3'
miRNA:   3'- -UGCGG--CGCUGu----UGCCGG-CGGCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 31689 0.68 0.648593
Target:  5'- cCGUCGCgGACGAaaguggGGCCGuCUGCAcGCCc -3'
miRNA:   3'- uGCGGCG-CUGUUg-----CCGGC-GGCGU-CGG- -5'
1621 3' -62.5 NC_001347.2 + 34050 0.67 0.658083
Target:  5'- uAUGUCGCGACAAUcGCCGacaaGcCGGCCc -3'
miRNA:   3'- -UGCGGCGCUGUUGcCGGCgg--C-GUCGG- -5'
1621 3' -62.5 NC_001347.2 + 35309 0.66 0.759737
Target:  5'- gGCGCCGgGACucuggugcuAUGGCUGCUcaauGCCa -3'
miRNA:   3'- -UGCGGCgCUGu--------UGCCGGCGGcgu-CGG- -5'
1621 3' -62.5 NC_001347.2 + 37058 0.74 0.297609
Target:  5'- -gGCCGCGGagguGCuGGCgGCCGUGGCCu -3'
miRNA:   3'- ugCGGCGCUgu--UG-CCGgCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 37258 0.68 0.648593
Target:  5'- uUGCUuugGCGGCAGCGGagguggGCCGgGGCCc -3'
miRNA:   3'- uGCGG---CGCUGUUGCCgg----CGGCgUCGG- -5'
1621 3' -62.5 NC_001347.2 + 37996 0.72 0.413833
Target:  5'- -aGCuCG-GGCAGCaGCCGCCGCgcGGCCu -3'
miRNA:   3'- ugCG-GCgCUGUUGcCGGCGGCG--UCGG- -5'
1621 3' -62.5 NC_001347.2 + 38067 0.69 0.560623
Target:  5'- cACGCCcgcgcgcagaaaguGCGACAGCu-CCGCCGcCAGCg -3'
miRNA:   3'- -UGCGG--------------CGCUGUUGccGGCGGC-GUCGg -5'
1621 3' -62.5 NC_001347.2 + 38242 0.68 0.629586
Target:  5'- gGCGCCGCu---GCuGCUGCCGCGuccGCCc -3'
miRNA:   3'- -UGCGGCGcuguUGcCGGCGGCGU---CGG- -5'
1621 3' -62.5 NC_001347.2 + 38314 0.67 0.677003
Target:  5'- cCGCCgGCGGCGccguACGGCUGCgGaGGCa -3'
miRNA:   3'- uGCGG-CGCUGU----UGCCGGCGgCgUCGg -5'
1621 3' -62.5 NC_001347.2 + 38369 0.67 0.705126
Target:  5'- cCGCuauCGCGcACGGCGcguccCCGCCGgCGGCCu -3'
miRNA:   3'- uGCG---GCGC-UGUUGCc----GGCGGC-GUCGG- -5'
1621 3' -62.5 NC_001347.2 + 38420 0.72 0.390006
Target:  5'- uCGCCGCuGGCGGCGacgucguccccGCCGCCGUccccgucgccGGCCc -3'
miRNA:   3'- uGCGGCG-CUGUUGC-----------CGGCGGCG----------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 38497 0.69 0.582203
Target:  5'- aGCaCCGCGccCAGCGccaGCCaGCCGCAGCa -3'
miRNA:   3'- -UGcGGCGCu-GUUGC---CGG-CGGCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 38531 0.72 0.405791
Target:  5'- gACGCUGguucaggugcCGACGcACGGCCGUCaGCAGCg -3'
miRNA:   3'- -UGCGGC----------GCUGU-UGCCGGCGG-CGUCGg -5'
1621 3' -62.5 NC_001347.2 + 38770 0.67 0.667555
Target:  5'- aGCGUCGCGcGCGGgGuGCCcacGCC-CAGCCg -3'
miRNA:   3'- -UGCGGCGC-UGUUgC-CGG---CGGcGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 39044 0.67 0.658083
Target:  5'- cGCGucCCGCGGCGACaguugacgcaGGuCCGUCGC-GCCc -3'
miRNA:   3'- -UGC--GGCGCUGUUG----------CC-GGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 39163 0.69 0.56717
Target:  5'- cGCGCUGCGACcacuugcgcauggcGCGGCCcguGCUGuUGGCCa -3'
miRNA:   3'- -UGCGGCGCUGu-------------UGCCGG---CGGC-GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.