miRNA display CGI


Results 61 - 80 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 39377 0.78 0.181334
Target:  5'- gACGCCGUGGCc-CGGCguCGUCGUAGCCg -3'
miRNA:   3'- -UGCGGCGCUGuuGCCG--GCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 39523 0.71 0.464061
Target:  5'- gGCGCgGCGACAu--GCCGuuGCgcugGGCCa -3'
miRNA:   3'- -UGCGgCGCUGUugcCGGCggCG----UCGG- -5'
1621 3' -62.5 NC_001347.2 + 40092 0.66 0.741844
Target:  5'- aACGCCcgggggcgaGgGACGACGGCC-CUGgGGaCCg -3'
miRNA:   3'- -UGCGG---------CgCUGUUGCCGGcGGCgUC-GG- -5'
1621 3' -62.5 NC_001347.2 + 40334 0.67 0.673227
Target:  5'- cACGcCCGCGACAcaccCGGCacacacccacccgGCCGC-GCCc -3'
miRNA:   3'- -UGC-GGCGCUGUu---GCCGg------------CGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 41169 0.74 0.304075
Target:  5'- cCGCCGCGGCggUGGCgacuggGCCGaCAGCg -3'
miRNA:   3'- uGCGGCGCUGuuGCCGg-----CGGC-GUCGg -5'
1621 3' -62.5 NC_001347.2 + 41285 0.69 0.56717
Target:  5'- cGCGCCaacGCGACGgccucgcugacuggaACGucguacGCUGCCGCGGCa -3'
miRNA:   3'- -UGCGG---CGCUGU---------------UGC------CGGCGGCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 43118 0.66 0.741844
Target:  5'- -gGCCacuGCGAuCAGCGGCaUGCCGaC-GCCg -3'
miRNA:   3'- ugCGG---CGCU-GUUGCCG-GCGGC-GuCGG- -5'
1621 3' -62.5 NC_001347.2 + 44029 0.71 0.464061
Target:  5'- aACGCgGUGGCGACGGCaGCgGUGGUg -3'
miRNA:   3'- -UGCGgCGCUGUUGCCGgCGgCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 44351 0.66 0.723621
Target:  5'- aGCGCCGacCGAcCAGcCGGCCGauuCGCccGCCg -3'
miRNA:   3'- -UGCGGC--GCU-GUU-GCCGGCg--GCGu-CGG- -5'
1621 3' -62.5 NC_001347.2 + 47133 0.84 0.074024
Target:  5'- -gGCgGCGGCAAUGGCCGCgGCAGCg -3'
miRNA:   3'- ugCGgCGCUGUUGCCGGCGgCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 53699 0.68 0.63624
Target:  5'- gACGCCGUucuuGACGACguuguGGCUgcuauugggucacaGCCGCGuGCCg -3'
miRNA:   3'- -UGCGGCG----CUGUUG-----CCGG--------------CGGCGU-CGG- -5'
1621 3' -62.5 NC_001347.2 + 54248 0.68 0.621032
Target:  5'- uACGCUGCGGCAaagugaacgacaagGCGcaguaccugcugggcGCCGCUgGCAGCg -3'
miRNA:   3'- -UGCGGCGCUGU--------------UGC---------------CGGCGG-CGUCGg -5'
1621 3' -62.5 NC_001347.2 + 56145 0.68 0.610585
Target:  5'- cAUGCCuccaGCGACucAUGGUCGCUcgGCAGCUc -3'
miRNA:   3'- -UGCGG----CGCUGu-UGCCGGCGG--CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 56238 0.68 0.610585
Target:  5'- gUGCCGC-ACAA-GGCCGUgGCGGUa -3'
miRNA:   3'- uGCGGCGcUGUUgCCGGCGgCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 58849 0.66 0.712553
Target:  5'- cGCGUCuuccccuuccacCGGCAGCGGCaCGCCGgAGUg -3'
miRNA:   3'- -UGCGGc-----------GCUGUUGCCG-GCGGCgUCGg -5'
1621 3' -62.5 NC_001347.2 + 62744 0.74 0.297609
Target:  5'- cGCGCCGCcccgugacGACgAGCGGCgGCCgaccccgccguuGCGGCCg -3'
miRNA:   3'- -UGCGGCG--------CUG-UUGCCGgCGG------------CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 63105 0.86 0.052151
Target:  5'- cCGCCGUGGCcgccGCGGCCGCCGCuguGGCCg -3'
miRNA:   3'- uGCGGCGCUGu---UGCCGGCGGCG---UCGG- -5'
1621 3' -62.5 NC_001347.2 + 63229 0.73 0.331012
Target:  5'- gACGCUGUuuACGcCGGCCuCCGCGGCCg -3'
miRNA:   3'- -UGCGGCGc-UGUuGCCGGcGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 63264 0.66 0.76327
Target:  5'- cCGCCGUGGCcaccAACGGCgGUaaCGCcaccuacauuuugccGGCCg -3'
miRNA:   3'- uGCGGCGCUG----UUGCCGgCG--GCG---------------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 63381 0.67 0.658083
Target:  5'- -gGCUGCacGACuccACGGCCG-UGCAGCUg -3'
miRNA:   3'- ugCGGCG--CUGu--UGCCGGCgGCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.