miRNA display CGI


Results 81 - 100 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 63514 0.66 0.741844
Target:  5'- gAUGCCGC-ACAc--GCCacagGCCGUAGCCa -3'
miRNA:   3'- -UGCGGCGcUGUugcCGG----CGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 64749 0.69 0.582203
Target:  5'- gUGCCGCaGACuuGAUGuGCCGCCGCccggauugcGGCUu -3'
miRNA:   3'- uGCGGCG-CUG--UUGC-CGGCGGCG---------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 65151 0.68 0.601103
Target:  5'- aGCGCCGCgcugGAUGACGGUgaUGC-GCGGCUa -3'
miRNA:   3'- -UGCGGCG----CUGUUGCCG--GCGgCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 65185 0.69 0.544815
Target:  5'- aGCGagUGCGGCGAUGGCuCGCCG--GCCg -3'
miRNA:   3'- -UGCg-GCGCUGUUGCCG-GCGGCguCGG- -5'
1621 3' -62.5 NC_001347.2 + 65217 0.67 0.677003
Target:  5'- cACG-UGCGugGACGaCCuguGCCGCGGCUa -3'
miRNA:   3'- -UGCgGCGCugUUGCcGG---CGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 65371 0.66 0.723621
Target:  5'- cGCGCCGUgcgucugcccGugAGCaccGCUGCCGC-GCCc -3'
miRNA:   3'- -UGCGGCG----------CugUUGc--CGGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 65858 0.69 0.563427
Target:  5'- aGCGCCaGCGGCuggccuuCGGCaCGCUgGCgGGCCg -3'
miRNA:   3'- -UGCGG-CGCUGuu-----GCCG-GCGG-CG-UCGG- -5'
1621 3' -62.5 NC_001347.2 + 65980 0.69 0.582203
Target:  5'- gACGCCugggcGCGAC-GCGGCgUGCUGCuGCUc -3'
miRNA:   3'- -UGCGG-----CGCUGuUGCCG-GCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 66504 0.83 0.079746
Target:  5'- aACGCCGCGAUcgaGGCGGCgGCgauCGCAGCCu -3'
miRNA:   3'- -UGCGGCGCUG---UUGCCGgCG---GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 66783 0.7 0.526408
Target:  5'- cCGCC-CGACggUGGUgGCgGCGGCg -3'
miRNA:   3'- uGCGGcGCUGuuGCCGgCGgCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 67024 0.66 0.714404
Target:  5'- -gGCUGCGGaGACaGCUGCgGCGGUCc -3'
miRNA:   3'- ugCGGCGCUgUUGcCGGCGgCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 67640 0.8 0.13007
Target:  5'- aGCGgCaGCGACAuGCGGCCGCUGCcGCCg -3'
miRNA:   3'- -UGCgG-CGCUGU-UGCCGGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 67943 0.68 0.601103
Target:  5'- cCGUCGUucucggaggagGGaGGCGGCCGCCGCuccuucuGCCg -3'
miRNA:   3'- uGCGGCG-----------CUgUUGCCGGCGGCGu------CGG- -5'
1621 3' -62.5 NC_001347.2 + 68740 0.8 0.133238
Target:  5'- -gGCCGUGG-AGCGaguGCCGCCGCAGCCg -3'
miRNA:   3'- ugCGGCGCUgUUGC---CGGCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 71649 0.69 0.554098
Target:  5'- uACGCaucCGUGGCcGCGGCCG--GCGGCCu -3'
miRNA:   3'- -UGCG---GCGCUGuUGCCGGCggCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 73695 0.68 0.620082
Target:  5'- cGCGCaCGCGAgaAGgGGCCGggguCCGCGGgCa -3'
miRNA:   3'- -UGCG-GCGCUg-UUgCCGGC----GGCGUCgG- -5'
1621 3' -62.5 NC_001347.2 + 74107 0.66 0.750835
Target:  5'- --aCCG-GACGACGGUCaGCCGCGGg- -3'
miRNA:   3'- ugcGGCgCUGUUGCCGG-CGGCGUCgg -5'
1621 3' -62.5 NC_001347.2 + 74849 0.68 0.620082
Target:  5'- cCGCCGCGAaa--GGCCGCgcUGCA-CCa -3'
miRNA:   3'- uGCGGCGCUguugCCGGCG--GCGUcGG- -5'
1621 3' -62.5 NC_001347.2 + 75396 0.72 0.397848
Target:  5'- cCGCUccaaGCGGgAGCGGCgGCCGUGGCg -3'
miRNA:   3'- uGCGG----CGCUgUUGCCGgCGGCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 75771 0.68 0.648593
Target:  5'- aACGCCGUcuCGuCGuuGCCGCCGguGCUc -3'
miRNA:   3'- -UGCGGCGcuGUuGC--CGGCGGCguCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.