miRNA display CGI


Results 21 - 40 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 197619 0.78 0.185611
Target:  5'- cGCGCCGcCGACuc--GCUGCCGCAGCUg -3'
miRNA:   3'- -UGCGGC-GCUGuugcCGGCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 197551 0.71 0.455465
Target:  5'- aGCGUgGcCGGCGugGCGGCCGaCgGCAGCg -3'
miRNA:   3'- -UGCGgC-GCUGU--UGCCGGC-GgCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 197082 0.67 0.67606
Target:  5'- gACGCCGagcugagcaaccaCGcCAACcgcuGCCGCCGCAagGCCc -3'
miRNA:   3'- -UGCGGC-------------GCuGUUGc---CGGCGGCGU--CGG- -5'
1621 3' -62.5 NC_001347.2 + 197033 0.79 0.153777
Target:  5'- cGCGCCGCaggaucGCAcGCGGCUGCCGCAGUUc -3'
miRNA:   3'- -UGCGGCGc-----UGU-UGCCGGCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 196951 0.73 0.352342
Target:  5'- uGCGCCGgGGCugucGCGcGCCGCCGaC-GCCc -3'
miRNA:   3'- -UGCGGCgCUGu---UGC-CGGCGGC-GuCGG- -5'
1621 3' -62.5 NC_001347.2 + 196608 0.71 0.446956
Target:  5'- aACGCCGUGcuggcccuGCGuaucauuCGGCUGCUGCGcGCCa -3'
miRNA:   3'- -UGCGGCGC--------UGUu------GCCGGCGGCGU-CGG- -5'
1621 3' -62.5 NC_001347.2 + 196143 0.67 0.695795
Target:  5'- cCGCUGCcugcCGGCGGCCcuguGCCGCGgguuGCCc -3'
miRNA:   3'- uGCGGCGcu--GUUGCCGG----CGGCGU----CGG- -5'
1621 3' -62.5 NC_001347.2 + 195663 0.76 0.249705
Target:  5'- cACGCC-CGAgGaucugGCGGCCGCCgGCGGUCa -3'
miRNA:   3'- -UGCGGcGCUgU-----UGCCGGCGG-CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 195437 0.66 0.736409
Target:  5'- aACcCCGUGGauCAGCcGCCGCCuccacugccaacccaGCAGCCg -3'
miRNA:   3'- -UGcGGCGCU--GUUGcCGGCGG---------------CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 194490 0.68 0.639092
Target:  5'- cCGCUGUG-C--UGGCCGCCGCuGCa -3'
miRNA:   3'- uGCGGCGCuGuuGCCGGCGGCGuCGg -5'
1621 3' -62.5 NC_001347.2 + 193659 0.68 0.648593
Target:  5'- gUGCCGCcGCucGCGcGCCuccGCuCGCGGCCg -3'
miRNA:   3'- uGCGGCGcUGu-UGC-CGG---CG-GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 193094 0.74 0.324116
Target:  5'- -gGCCGUcGCAAgGGCUGCUcgGCGGCCa -3'
miRNA:   3'- ugCGGCGcUGUUgCCGGCGG--CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 192729 0.68 0.639092
Target:  5'- cGCGCCGUcaACAGCGuGCCuuuuGCCGCgcgAGUCg -3'
miRNA:   3'- -UGCGGCGc-UGUUGC-CGG----CGGCG---UCGG- -5'
1621 3' -62.5 NC_001347.2 + 192175 0.68 0.620082
Target:  5'- cCGCCGUcuccgGAUgAGCGGCCGCgGCgcgGGCUc -3'
miRNA:   3'- uGCGGCG-----CUG-UUGCCGGCGgCG---UCGG- -5'
1621 3' -62.5 NC_001347.2 + 192045 0.68 0.645744
Target:  5'- -aGCgGCGACGACGGUgGCgGCgacgacacggcgacGGUCa -3'
miRNA:   3'- ugCGgCGCUGUUGCCGgCGgCG--------------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 191990 0.7 0.481501
Target:  5'- -aGCgGCGGCGACGGaCgGCgGCGGUa -3'
miRNA:   3'- ugCGgCGCUGUUGCC-GgCGgCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 191208 0.75 0.284999
Target:  5'- aACGCCGCu----CGGagcaCCGCCGCAGCCc -3'
miRNA:   3'- -UGCGGCGcuguuGCC----GGCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 190875 0.67 0.705126
Target:  5'- gACGCgGUGACAGaaggaGGUgGCCacGguGCCc -3'
miRNA:   3'- -UGCGgCGCUGUUg----CCGgCGG--CguCGG- -5'
1621 3' -62.5 NC_001347.2 + 190521 0.7 0.526408
Target:  5'- uGCGCguccacagCGUGACuuugAGCGGCuCGCCGCcgcGCCa -3'
miRNA:   3'- -UGCG--------GCGCUG----UUGCCG-GCGGCGu--CGG- -5'
1621 3' -62.5 NC_001347.2 + 190041 0.71 0.438536
Target:  5'- cACGCCGCu-CGACGGggaCCGCCGCcGUa -3'
miRNA:   3'- -UGCGGCGcuGUUGCC---GGCGGCGuCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.